Not Able to Run Shell Script in Cygwin using java - java

I am trying to run Shell script using java Application. I am using Process builder for the same.
{
String cmd;
cmd = "D:/cygwin/bin/bash -c '/bin/app.sh 121 121 1212 12121'";
System.out.println("EXECING: " + cmd);
p = Runtime.getRuntime().exec(cmd);
in = p.getInputStream();
br = new BufferedReader(new InputStreamReader(in));
System.out.println("OUT:");
while ((line = br.readLine()) != null) {
System.out.println(line);
}
in = p.getErrorStream();
br = new BufferedReader(new InputStreamReader(in));
System.out.println("ERR:");
while ((line = br.readLine()) != null) {
System.out.println(line);
}
System.out.println();
}
This Code Works Fine when I Uses Simple shell script like.
#!/bin/bash
# Call this script with at least 3 parameters, for example
# sh scriptname 1 2 3 4
echo "first parameter is $1"
echo "Second parameter is $2"
echo "Third parameter is $3"
echo "Third parameter is $4"
exit 0
Can Any one Suggest me the way where i can Open Cygwin and then parameters to shell script
becoz. My another Shell script doesn't work at the same location showing error msg.
app.sh: line 57: lib/renameapp.sh: No such file or directory
app.sh: line 226: clear: command not found
app.sh: line 69: grep: command not found
app.sh: line 69: cut: command not found
app.sh: line 74: grep: command not found
Can Any one Suggest me How to Open Cygwin Terminal using java and Run shell Script using java..
Thanks in Advance...

You should either setup your %PATH environment variable appropriately, or use absolute paths in your shell script.

The PATH variable is not being set as you expect -- it may be that the environment is being lost when you start the process from Java, or maybe Cygwin is not doing its normal PATH magic because it isn't a login shell, I'm not sure. Either way, just add export PATH="$PATH:/bin:/usr/bin:/usr/local/bin" to the top of your script and it will almost certainly work again.

Related

Get Windows Command Line charset in java

I've been having problems reading output of windows command line from Java, i'm using Runtime.getRuntime().exec()
I simplified my test case: I have a file called お読みください.txt, and i execute the following command cmd /c dir C:/PATH
Note: The actual command is tasklist, but it's the same result as long as i use Runtime.getRuntime().exec()
String[] cmd = new String[]{ "cmd", "/c", "dir" };
Process process = Runtime.getRuntime().exec(cmd);
BufferedReader stdInput =
new BufferedReader(new InputStreamReader(process.getInputStream(), StandardCharsets.UTF_8));
String s, result = "";
while ((s = stdInput.readLine()) != null) {
if (!s.isEmpty()) {
result += s + "\n";
}
}
System.out.println(result);
I just get ���ǂ݂�������.txt
I tried with no charset, default, and the other ones; after testing all charsets, i got the one i was looking for: Shift_JIS
And that must be because i have set Language for non-Unicode applications as Japanese. systeminfo.exe says ja;Japanese for Regional Config.
I can simply use Shift_JIS to read, but it will only work in my computer. What about other system configurations?
The question is, how can i get the correct charset to read Windows Console output?
Base on the answer of What encoding/code page is cmd.exe using?
You can execute cmd /k chcp && pause && exit to get current code page. Using Code Page Identifiers to find the mapping Java encoding name.

Source command not working through Java

From last day, I have been trying to execute a command on Terminal (MAC) using JAVA but whatever I do nothing is working.
I have the following 2 commands that I want to execute and get the output back in JAVA
source activate abc_env
python example.py
Till now, I have tried the following methods without any output
String[] command = new String[] { "source activate abc_env", "python example.py"};
String result = executeCommands(command);
Here is my executeCommands method
private static String executeCommands(String[] command) {
StringBuffer output = new StringBuffer();
Process p;
try {
for(int i=0; i< command.length;i++)
{
p = Runtime.getRuntime().exec(command[i]);
p.waitFor();
BufferedReader reader =
new BufferedReader(new InputStreamReader(p.getInputStream()));
String line = "";
while ((line = reader.readLine())!= null) {
output.append(line + "\n");
}
System.out.println("Error output: " + p.exitValue());
System.out.println("Output:" + output);
}
} catch (Exception e) {
e.printStackTrace();
System.out.println("Here");
}
return output.toString();
}
This gives me the following exception
Cannot run program "source": error=2, No such file or directory
I searched online and people say that source won't work like this and I should change the command to
String[] command = new String[] { "bash -c 'source activate abc_env'", "python example.py"};
Now, I donot get the exception but the command still does not work and it returns '2' as exitValue()
Then I tried to execute the commands as a script
#!/bin/bash
source activate abc_env
python example.py
I get the following exception when I read the .sh file as string and pass it to command
Cannot run program "#!/bin/bash": error=2, No such file or directory
So, my question is how to run the source command followed by python command properly through Java ? My final goal is execute some python from Java.
EDIT1:
If I try the following command and print the output stream
String[] command = {
"/bin/bash",
"-c",
"source activate cvxpy_env"
};
executeCommand(command));
Output Stream:
ExitValue:1
ErrorOutput:/bin/bash: activate: No such file or directory
If I try the same command but with single quotes around 'source activate abc_env'. I get the following output
ExitValue:127
ErrorOutput:/bin/bash: source activate cvxpy_env: command not found
Solution:
String[] command = {
"/bin/bash",
"-c",
"source /Users/pc_name/my_python_library/bin/activate abc_env;python example.py"
};
According to the Javadoc, Runtime.exec(String) breaks the command into the command-args list using a StringTokenizer, which will probably break your command into:
bash
-c
'source
activate
abc_env'
Which is obviously not what you want. What you should do is probably use the version of Runtime.exec(String[]) that accepts a ready list of arguments, passing to it new String[] {"bash", "-c", "source activate abc_env"}.
Now, to get an idea why it's not working, you should not only read from its stdout but also from stderr, using p.getErrorStream(). Just print out what you read, and it will be a great debugging aid.
Re: your edit. Now it looks like it's working fine, as far as Java and bash are concerned. The output "activate: No such file or directory" is probably the output from the successful run of the source command. It just that source can't find the activate file. Is it in the working directory? If not, you probably should have "cd /wherever/your/files/are; source activate cvxpy_env". Oh, and if your python script depends on whatever side-effects the source command has, you probably have to execute it in the same bash instance, that is:
String[] command = {
"/bin/bash",
"-c",
"cd /wherever/your/files/are && source activate cvxpy_env && python example.py"
};
Or better yet, pack it all into a single shell script, and then just Runtime.exec("./my_script.sh") (don't forget to chmod +x it, though).
Try
String[] command = {
"/bin/bash",
"-c",
"source activate abc_env; " + "python example.py"
};

run bash commande by ssh using Java

I want to run a script with ssh from java. The script takes a number as parameter. I launch this code :
String myKey="/home/my_key.pem";
Runtime runtime = Runtime.getRuntime();
String commande = "ssh -i "
+myKey+" ubuntu#ec2-56-75-88-183.eu-west-1.compute.amazonaws.com './runScript.bash 8000'";
Process p = runtime.exec(commande);
BufferedReader reader = new BufferedReader(new InputStreamReader(p.getErrorStream()));
String line = reader.readLine();
while (line != null) {
System.out.println(line);
line = reader.readLine();
}
p.waitFor();
I obtain this error :
bash: ./runScript.bash 8000: No such file or directory
The name of file is correct. chmod given to runScript.bash is 777.
When i run the command line directly from bash it works. But from IDE, it does not.
How can i do to run this commande line correctly please ?
The error makes it clear:
bash: ./runScript.bash 8000: No such file or directory
This indicates that the shell is trying to invoke a script called ./runScript.bash 8000 -- with the space and the 8000 in the filename of the script.
It's rare for me to be telling anyone to use fewer quotes, but, well, this is actually a case where that would fix things.
Better would be to avoid double evaluation altogether:
Runtime.exec(new String[] {
"ssh",
"-i", myKey,
"ubuntu#ec2-56-75-88-183.eu-west-1.compute.amazonaws.com",
"./runScript 8000"
})

Java executes only first command from .sh file

The problem is that I am running a .sh file from which has 3 commands using Java's Runtime.exec("") method but only first command from .sh file gets executed.
Can anyone answer what could be the problem ?
Here is my code.
Process process = Runtime.getRuntime().exec("run.sh");
process.waitFor();
DataInputStream d = new DataInputStream(process.getInputStream());
System.out.println(d.readLine());
System.out.println("test");
run.sh script is as follows :
#! /bin/sh
echo "start"
ls -a
echo "stop"
It executes the run.sh but only first command is getting executed(echo command). I tried with different commands but result remains the same. Only first one gets executed.
DataInputStream d = new DataInputStream(process.getInputStream());
System.out.println(d.readLine());
The shell script is executing all the commands, but you are just reading the first line from the process' input stream that contains all the output of the shell script. Instead, read till the end of stream and you would see the output of all the commands.
String output = StringUtils.join(IOUtils.readLines(process.getInputStream));
Both StringUtils and IOUtils are utility classes from apache commons lang and commons IO respectively.
If you don't want to use the commons libraries, then
StringBuilder output = new StringBuilder;
String line;
while ((line = d.readLine()) != null) {
output.append(line);
}
System.out.println(output.toString());

Execute external program from Java

I am trying to execute a program from the Java code. Here is my code:
public static void main(String argv[]) {
try {
String line;
Process p = Runtime.getRuntime().exec(new String[]{
"/bin/bash", "-c", "executable -o filename.txt"});
BufferedReader input = new BufferedReader(
new InputStreamReader(p.getInputStream()));
while ((line = input.readLine()) != null) {
System.out.println(line);
}
input.close();
} catch (Exception err) {
err.printStackTrace();
}
}
My OS is Mac OS X 10.6.
Now, the executable I am trying to run is supposed to spit the output to filename.txt. If I take this command and run it on the terminal, it works fine and the filename.txt gets populated also. But, from my java program the file is not created.
if instead I use executable > filename.txt then the filename.txt is created but is empty. Not sure what's wrong here. The executable I am trying to run is Xtide (if that helps).
I would really appreciate any help I can get.
Thanks,
You cannot redirect output to file and read the output in java. It's one or the other. What you want is this:
Process p = Runtime.getRuntime().exec(new String[]{
"/bin/bash", "-c", "executable -o filename.txt"});
p.waitFor();
BufferedReader input = new BufferedReader(
new InputStreamReader(new FileInputStream("filename.txt")));
while ((line = input.readLine()) != null) {
System.out.println(line);
}
The main changes are:
p.waitFor(), since process execution is asynchronous, so you have to wait for it to complete.
The data is read from the file rather than from the output of the process (since this will be empty.)
The answer from mdma works (and I voted it up), but you might also want to consider the version where you do read the output stream directly from executable:
Process p = Runtime.getRuntime().exec(new String[]{
"/bin/bash", "-c", "executable"});
p.waitFor();
BufferedReader input = new BufferedReader(new InputStreamReader(p.getInputStream())_;
while ((line = input.readLine()) != null) {
System.out.println(line);
}
Correct me if I am wrong, but the symptoms are as follows:
exec("/usr/bash", "-c", "executable > filename.txt") creates an empty file.
exec("/usr/bash", "-c", "executable -o filename.txt") does not create a file.
One or both of the above gives an exit code of 255 when you look at it.
When you run the command from the command line as executable -o filename.txt or executable > filename.txt it works as expected.
In the light of the above, I think that the most likely cause is that /bin/bash is not finding the executable when you launch it from Java. The fact that the first example does create an empty file means that /bin/bash is doing something. But if you try to run
$ unknown-command > somefile.txt
from a bash shell prompt you will get an error message saying that the command cannot be found and an empty "something.txt" file. (You would not see the error message in your Java app because it is being written to stderr, and you are not capturing it.) The reason that the empty "something.txt" file is created is that it is opened by the shell before it attempts to fork and exec the "executable".
If this is the problem, then the simple solution is to use the absolute pathname for the executable.
Also, if you are not doing any command line redirection or other shell magic, there is no need to run the executable in a new bash instance. Rather, just do this:
Process p = Runtime.getRuntime().exec("executable", "-o", filename.txt");
then wait for the process to complete and check the exit code before trying to read the file contents.

Categories