I am trying to execute a program from the Java code. Here is my code:
public static void main(String argv[]) {
try {
String line;
Process p = Runtime.getRuntime().exec(new String[]{
"/bin/bash", "-c", "executable -o filename.txt"});
BufferedReader input = new BufferedReader(
new InputStreamReader(p.getInputStream()));
while ((line = input.readLine()) != null) {
System.out.println(line);
}
input.close();
} catch (Exception err) {
err.printStackTrace();
}
}
My OS is Mac OS X 10.6.
Now, the executable I am trying to run is supposed to spit the output to filename.txt. If I take this command and run it on the terminal, it works fine and the filename.txt gets populated also. But, from my java program the file is not created.
if instead I use executable > filename.txt then the filename.txt is created but is empty. Not sure what's wrong here. The executable I am trying to run is Xtide (if that helps).
I would really appreciate any help I can get.
Thanks,
You cannot redirect output to file and read the output in java. It's one or the other. What you want is this:
Process p = Runtime.getRuntime().exec(new String[]{
"/bin/bash", "-c", "executable -o filename.txt"});
p.waitFor();
BufferedReader input = new BufferedReader(
new InputStreamReader(new FileInputStream("filename.txt")));
while ((line = input.readLine()) != null) {
System.out.println(line);
}
The main changes are:
p.waitFor(), since process execution is asynchronous, so you have to wait for it to complete.
The data is read from the file rather than from the output of the process (since this will be empty.)
The answer from mdma works (and I voted it up), but you might also want to consider the version where you do read the output stream directly from executable:
Process p = Runtime.getRuntime().exec(new String[]{
"/bin/bash", "-c", "executable"});
p.waitFor();
BufferedReader input = new BufferedReader(new InputStreamReader(p.getInputStream())_;
while ((line = input.readLine()) != null) {
System.out.println(line);
}
Correct me if I am wrong, but the symptoms are as follows:
exec("/usr/bash", "-c", "executable > filename.txt") creates an empty file.
exec("/usr/bash", "-c", "executable -o filename.txt") does not create a file.
One or both of the above gives an exit code of 255 when you look at it.
When you run the command from the command line as executable -o filename.txt or executable > filename.txt it works as expected.
In the light of the above, I think that the most likely cause is that /bin/bash is not finding the executable when you launch it from Java. The fact that the first example does create an empty file means that /bin/bash is doing something. But if you try to run
$ unknown-command > somefile.txt
from a bash shell prompt you will get an error message saying that the command cannot be found and an empty "something.txt" file. (You would not see the error message in your Java app because it is being written to stderr, and you are not capturing it.) The reason that the empty "something.txt" file is created is that it is opened by the shell before it attempts to fork and exec the "executable".
If this is the problem, then the simple solution is to use the absolute pathname for the executable.
Also, if you are not doing any command line redirection or other shell magic, there is no need to run the executable in a new bash instance. Rather, just do this:
Process p = Runtime.getRuntime().exec("executable", "-o", filename.txt");
then wait for the process to complete and check the exit code before trying to read the file contents.
Related
So for work I would like to automate something for minitab. We get results from our microscope and these need to be put into Minitab. Now I wanted to make a program that does some changes to the text file and then automatically opens minitab with a macro. I have everything working except for the auto opening of the macro with minitab.
I can launch it from cmd manually no problem, so it should be working.
Code can be found below, after compiling and running I get this error
'C:/Program' is not recognized as an internal or external command,
operable program or batch file.
Process finished with exit code 0
Which makes me believe cmd does something like:
cmd.exe,/c,c:/Program,Files/..
instead of
cmd.exe,/c,c:/program files/...
String PathExe = "\"C:/Program Files/Minitab/Minitab 17/Minitab 17/Mtb.exe\"";
String Macro = "\"c:/minitAPP/Import.mtb\"";
ProcessBuilder builder;
builder = new ProcessBuilder("cmd.exe", "/c", PathExe + " " + Macro);
builder.redirectErrorStream(true);
Process p = builder.start();
BufferedReader r = new BufferedReader(new InputStreamReader(p.getInputStream()));
String line;
while (true) {
line = r.readLine();
if (line == null) { break; }
System.out.println(line);
There is no need to use cmd.exe to execute another .exe file. Just execute it directly, without the quotes:
ProcessBuilder builder = new ProcessBuilder(
"C:\\Program Files\\Minitab\\Minitab 17\\Minitab 17\\Mtb.exe",
"c:\\minitAPP\\Import.mtb");
By specifying an entire path as a single argument to ProcessBuilder, you ensure that the operating system will treat it as a single argument, which is the purpose of using quotations marks on a normal command line.
From last day, I have been trying to execute a command on Terminal (MAC) using JAVA but whatever I do nothing is working.
I have the following 2 commands that I want to execute and get the output back in JAVA
source activate abc_env
python example.py
Till now, I have tried the following methods without any output
String[] command = new String[] { "source activate abc_env", "python example.py"};
String result = executeCommands(command);
Here is my executeCommands method
private static String executeCommands(String[] command) {
StringBuffer output = new StringBuffer();
Process p;
try {
for(int i=0; i< command.length;i++)
{
p = Runtime.getRuntime().exec(command[i]);
p.waitFor();
BufferedReader reader =
new BufferedReader(new InputStreamReader(p.getInputStream()));
String line = "";
while ((line = reader.readLine())!= null) {
output.append(line + "\n");
}
System.out.println("Error output: " + p.exitValue());
System.out.println("Output:" + output);
}
} catch (Exception e) {
e.printStackTrace();
System.out.println("Here");
}
return output.toString();
}
This gives me the following exception
Cannot run program "source": error=2, No such file or directory
I searched online and people say that source won't work like this and I should change the command to
String[] command = new String[] { "bash -c 'source activate abc_env'", "python example.py"};
Now, I donot get the exception but the command still does not work and it returns '2' as exitValue()
Then I tried to execute the commands as a script
#!/bin/bash
source activate abc_env
python example.py
I get the following exception when I read the .sh file as string and pass it to command
Cannot run program "#!/bin/bash": error=2, No such file or directory
So, my question is how to run the source command followed by python command properly through Java ? My final goal is execute some python from Java.
EDIT1:
If I try the following command and print the output stream
String[] command = {
"/bin/bash",
"-c",
"source activate cvxpy_env"
};
executeCommand(command));
Output Stream:
ExitValue:1
ErrorOutput:/bin/bash: activate: No such file or directory
If I try the same command but with single quotes around 'source activate abc_env'. I get the following output
ExitValue:127
ErrorOutput:/bin/bash: source activate cvxpy_env: command not found
Solution:
String[] command = {
"/bin/bash",
"-c",
"source /Users/pc_name/my_python_library/bin/activate abc_env;python example.py"
};
According to the Javadoc, Runtime.exec(String) breaks the command into the command-args list using a StringTokenizer, which will probably break your command into:
bash
-c
'source
activate
abc_env'
Which is obviously not what you want. What you should do is probably use the version of Runtime.exec(String[]) that accepts a ready list of arguments, passing to it new String[] {"bash", "-c", "source activate abc_env"}.
Now, to get an idea why it's not working, you should not only read from its stdout but also from stderr, using p.getErrorStream(). Just print out what you read, and it will be a great debugging aid.
Re: your edit. Now it looks like it's working fine, as far as Java and bash are concerned. The output "activate: No such file or directory" is probably the output from the successful run of the source command. It just that source can't find the activate file. Is it in the working directory? If not, you probably should have "cd /wherever/your/files/are; source activate cvxpy_env". Oh, and if your python script depends on whatever side-effects the source command has, you probably have to execute it in the same bash instance, that is:
String[] command = {
"/bin/bash",
"-c",
"cd /wherever/your/files/are && source activate cvxpy_env && python example.py"
};
Or better yet, pack it all into a single shell script, and then just Runtime.exec("./my_script.sh") (don't forget to chmod +x it, though).
Try
String[] command = {
"/bin/bash",
"-c",
"source activate abc_env; " + "python example.py"
};
I want to run a script with ssh from java. The script takes a number as parameter. I launch this code :
String myKey="/home/my_key.pem";
Runtime runtime = Runtime.getRuntime();
String commande = "ssh -i "
+myKey+" ubuntu#ec2-56-75-88-183.eu-west-1.compute.amazonaws.com './runScript.bash 8000'";
Process p = runtime.exec(commande);
BufferedReader reader = new BufferedReader(new InputStreamReader(p.getErrorStream()));
String line = reader.readLine();
while (line != null) {
System.out.println(line);
line = reader.readLine();
}
p.waitFor();
I obtain this error :
bash: ./runScript.bash 8000: No such file or directory
The name of file is correct. chmod given to runScript.bash is 777.
When i run the command line directly from bash it works. But from IDE, it does not.
How can i do to run this commande line correctly please ?
The error makes it clear:
bash: ./runScript.bash 8000: No such file or directory
This indicates that the shell is trying to invoke a script called ./runScript.bash 8000 -- with the space and the 8000 in the filename of the script.
It's rare for me to be telling anyone to use fewer quotes, but, well, this is actually a case where that would fix things.
Better would be to avoid double evaluation altogether:
Runtime.exec(new String[] {
"ssh",
"-i", myKey,
"ubuntu#ec2-56-75-88-183.eu-west-1.compute.amazonaws.com",
"./runScript 8000"
})
Can any body help me with how to compile a bash script as part of a java program. I am writing a simple java program that i want to use to invoke bash script commands.
my java code looks like the following:
try{
Process p = Runtime.getRuntime().exec("myscript.sh");
BufferedReader in = new BufferedReader(new InputStreamReader(p.getInputStream()));
String line = null;
while ((line = in.readLine()) != null){
System.out.println(line);
}
}
catch(IOException e){
System.out.println(e.getMessage());
}
and the "mysrcipt.sh" file is a simple script that contains the following lines
!/bin/bash
echo "enter your input followed by [ENTER]:"
read -e choice
echo $choice
My problem is, the program waits for an input at the read command in the script even if i enter multiple lines and press enter several times.
You can use:
Process p = Runtime.getRuntime().exec("bash_script.sh");
BufferedReader in = new BufferedReader(new InputStreamReader(p.getInputStream()));
String line = null;
while ((line = in.readLine()) != null) {
// use bash script line output
}
It would be helpful to see some code showing what you're trying to accomplish.
Executing bash script in Java can be done using something like the following...
Runtime runtime = Runtime.getRuntime();
Process process = runtime.exec("YOUR COMMAND STRING");
List<String> lines = IOUtils.readLines(process.getInputStream());
Runtime.exec() is what you need to execute your bash script, but be aware there are a few pitfalls. I found this to be a good article when starting to call external scripts.
It is written for a windows platform, but a lot of what is discussed is relevant to *nix as well.
See also this question.
I need to run a couple of other programs from my own Java program, basically I need to run these command line statements.
svn log --xml -v > svn.log
and
java -jar example.jar arg1 arg2
and I need to use the text outputs written to the console from these programs in my own program. I've tried Runtime.getRuntime().exec() with the svn, but it doesn't seem to be doing anything because it doesn't make a svn.log file. Also both programs need to be called in different places, the svn line needs to be called from inside one folder and the java line needs to be called from another.
Any ideas on how to go about this? If this is not possible in Java, is there a way to do it in C#?
Thanks
Here:
ProcessBuilder processbuilder
try
{
processbuilder.directory(file);
processbuilder.redirectErrorStream(true);
process = processbuilder.start();
String readLine;
BufferedReader output = new BufferedReader(new InputStreamReader(process.getInputStream()));
// include this too:
// BufferedReader output = new BufferedReader(new InputStreamReader(process.getErrorStream()));
while((readLine = output.readLine()) != null)
{
m_Logger.info(readLine);
}
process.waitFor();
}
I've used something similar. You'll actually want to do something with the readLine. I just copied and pasted from code where I didn't care what it said.
The redirection > (like the pipe |) is a shell construct and only works when you execute stuff via /bin/sh (or equivalent). So the above isn't really going to work. You could execute
/bin/sh -c "svn log --xml -v > svn.log"
and read svn.log.
Alternatively, you can read the output from the process execution and dump that to a file (if you need to dump it to a file, or just consume it directly as you read it). If you choose this route and consume stdout/stderr separately, note that when you consume the output (stdout), you need to consume stderr as well, and concurrently, otherwise buffers will block (and your spawned process) waiting for your process to consume this. See this answer for more details.
instead of piping in your command, just let it print to standard output and error output. You can access those streams from your process object that is returned from exec.
For the svn stuff use java SVNKit API.
Seeing your two commands, why don't you do it directly from Java, without executing ? You could use SVNKit for the svn part, and include directly the jars in your classpath.
Try this
public static void main(String[] args) {
try {
// Execute a command with an argument that contains a space
System.out.println(args[0]);
String[]commands = new String[]{"svn", "info", args[0]};
Process process = Runtime.getRuntime().exec(commands);
BufferedReader reader = new BufferedReader(new InputStreamReader(process.getInputStream()));
StringBuilder builder = new StringBuilder();
String line = null;
while ((line = reader.readLine()) != null) {
builder.append(line);
builder.append(System.getProperty("line.separator"));
}
String result = builder.toString();
System.out.println(result);
}catch(Exception e){
System.out.print(e);
}
}