I am using tesseract 3 with Java 8 on Windows 64-bit to OCR scanned PDFs. I have followed the instructions on the Tess4j page and have used the 64-bit versions of the required DLLs, and have installed 64-bit Ghostscript.
When I run my unit test with the normal #Test (no arguments), the code runs correctly, so I guess I have installed everything correctly.
When I run it with 2 threads in parallel (see below) I get an exception.
I have read the relevant thread here, but there it is suggested to use Tesseract1, which I am using (I have tried both).
Any ideas?
This is the code:
// #Test // works
#Test(invocationCount = 2, threadPoolSize = 2)
public void testOcr() throws OcrException, TesseractException {
File scannedPdf = new File(this.getClass().getClassLoader().getResource("scanned.pdf").getFile());
// Tesseract instance = Tesseract.getInstance(); // JNA Interface Mapping
Tesseract1 instance = new Tesseract1(); // JNA Direct Mapping
String str = instance.doOCR(scannedPdf);
System.out.println("OCR Result: " + str);
}
This is the exception:
log4j:WARN No appenders could be found for logger (org.ghost4j.Ghostscript).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Ιουλ 16, 2014 6:22:23 ΜΜ net.sourceforge.vietocr.PdfUtilities convertPdf2Png
SEVERE: Cannot initialize Ghostscript interpreter. Error code is -21
org.ghost4j.GhostscriptException: Cannot initialize Ghostscript interpreter. Error code is -21
at org.ghost4j.Ghostscript.initialize(Ghostscript.java:365)
at net.sourceforge.vietocr.PdfUtilities.convertPdf2Png(Unknown Source)
at net.sourceforge.vietocr.PdfUtilities.convertPdf2Tiff(Unknown Source)
at net.sourceforge.vietocr.ImageIOHelper.getIIOImageList(Unknown Source)
at net.sourceforge.tess4j.Tesseract1.doOCR(Unknown Source)
at net.sourceforge.tess4j.Tesseract1.doOCR(Unknown Source)
at OcrUtilsTest.testOcr(OcrUtilsTest.java:19)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:84)
at org.testng.internal.Invoker.invokeMethod(Invoker.java:714)
at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:901)
at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1231)
at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:127)
at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:111)
at org.testng.internal.thread.ThreadUtil$2.call(ThreadUtil.java:64)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
java.lang.Error: Invalid memory access
at com.sun.jna.Native.invokeInt(Native Method)
at com.sun.jna.Function.invoke(Function.java:383)
at com.sun.jna.Function.invoke(Function.java:315)
at com.sun.jna.Library$Handler.invoke(Library.java:212)
at com.sun.proxy.$Proxy3.gsapi_init_with_args(Unknown Source)
at org.ghost4j.Ghostscript.initialize(Ghostscript.java:350)
at net.sourceforge.vietocr.PdfUtilities.convertPdf2Png(Unknown Source)
at net.sourceforge.vietocr.PdfUtilities.convertPdf2Tiff(Unknown Source)
at net.sourceforge.vietocr.ImageIOHelper.getIIOImageList(Unknown Source)
at net.sourceforge.tess4j.Tesseract1.doOCR(Unknown Source)
at net.sourceforge.tess4j.Tesseract1.doOCR(Unknown Source)
at OcrUtilsTest.testOcr(OcrUtilsTest.java:19)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:84)
at org.testng.internal.Invoker.invokeMethod(Invoker.java:714)
at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:901)
at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1231)
at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:127)
at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:111)
at org.testng.internal.thread.ThreadUtil$2.call(ThreadUtil.java:64)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
net.sourceforge.tess4j.TesseractException: javax.imageio.IIOException: I/O error reading header!
at net.sourceforge.tess4j.Tesseract1.doOCR(Unknown Source)
at net.sourceforge.tess4j.Tesseract1.doOCR(Unknown Source)
at OcrUtilsTest.testOcr(OcrUtilsTest.java:19)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:84)
at org.testng.internal.Invoker.invokeMethod(Invoker.java:714)
at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:901)
at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1231)
at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:127)
at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:111)
at org.testng.internal.thread.ThreadUtil$2.call(ThreadUtil.java:64)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.imageio.IIOException: I/O error reading header!
at com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader.readHeader(TIFFImageReader.java:224)
at com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader.locateImage(TIFFImageReader.java:231)
at com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader.getNumImages(TIFFImageReader.java:279)
at net.sourceforge.vietocr.ImageIOHelper.getIIOImageList(Unknown Source)
... 18 more
Caused by: java.io.EOFException
at javax.imageio.stream.ImageInputStreamImpl.readShort(ImageInputStreamImpl.java:229)
at javax.imageio.stream.ImageInputStreamImpl.readUnsignedShort(ImageInputStreamImpl.java:242)
at com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader.readHeader(TIFFImageReader.java:199)
... 21 more
UPDATE: It seems related to this.
Tesseract on its own can only convert images to text, and not PDFs, even if the PDFs are scanned.
Under the hood, Tess4j uses Ghostscript (through ghost4j) to convert each page to a single image file, which it then feeds to Tesseract for OCR. It concatenates the resulting strings into a single string, which it returns.
The reason for the exception is that Tess4j uses Ghost4j in a way that does not support multithreading. As described here, ghost4j does provide multithreading support from its high-level API (actually it runs different instances of Ghostscript separately each invoked from a different JVM). Tess4j, however, uses its low-level API, where a single Ghostscript instance may be used.
Related
I am trying to run junits cases in eclipse. I am facing below error in my local, while running on higher env we are not facing any issues. The version I am using are- mockito-all-1.10.19, javassist-3.24.0-GA with powermock-mockito-release-full-1.6.4-full. I have also observed classes where we are not mocking CloseableHttpClient is working fine , means having no http call are working fine. Any idea how to resolve this?
The Top section of the class
#RunWith(PowerMockRunner.class)
#PrepareForTest({HttpClientBuilder.class,
PoolingHttpClientConnectionManager.class,Registry.class})
#SuppressStaticInitializationFor({ "com.yantra.yfs.core.YFSSystem" ,
"org.apache.http.client.config.RequestConfig",
"org.apache.http.conn.ssl.SSLConnectionSocketFactory","org.apache.http.impl.client.HttpClients","org.apache.http.impl.client.HttpClientBuilder","org.apache.http.config.Registry","org.apache.http.config.RegistryBuilder","org.apache.http.HttpEntity"})
StackTrace-
java.lang.IllegalStateException: Failed to transform class with name org.apache.http.impl.client.HttpClientBuilder. Reason: by javassist.bytecode.BadBytecode: build ()Lorg/apache/http/impl/client/CloseableHttpClient; in org.apache.http.impl.client.HttpClientBuilder: inconsistent stack height null
at org.powermock.core.classloader.MockClassLoader.loadMockClass(MockClassLoader.java:267)
at org.powermock.core.classloader.MockClassLoader.loadModifiedClass(MockClassLoader.java:180)
at org.powermock.core.classloader.DeferSupportingClassLoader.loadClass(DeferSupportingClassLoader.java:70)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2575)
at java.lang.Class.getDeclaredFields(Class.java:1908)
at org.powermock.reflect.internal.WhiteboxImpl.getField(WhiteboxImpl.java:170)
at org.powermock.core.MockGateway.fieldCall(MockGateway.java:221)
at com.walmart.ecommerce.oms.business.flexe.GetEcomResponseTest.testScenario4(GetEcomResponseTest.java:215)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:80)
at org.testng.internal.Invoker.invokeMethod(Invoker.java:714)
at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:901)
at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1231)
at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:127)
at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:111)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: javassist.CannotCompileException: by javassist.bytecode.BadBytecode: build ()Lorg/apache/http/impl/client/CloseableHttpClient; in org.apache.http.impl.client.HttpClientBuilder: inconsistent stack height null
at javassist.CtBehavior.insertBefore(CtBehavior.java:809)
at javassist.CtBehavior.insertBefore(CtBehavior.java:766)
at org.powermock.core.transformers.impl.MainMockTransformer.modifyMethod(MainMockTransformer.java:197)
at org.powermock.core.transformers.impl.MainMockTransformer.allowMockingOfStaticAndFinalAndNativeMethods(MainMockTransformer.java:133)
at org.powermock.core.transformers.impl.MainMockTransformer.transform(MainMockTransformer.java:65)
at org.powermock.core.classloader.MockClassLoader.loadMockClass(MockClassLoader.java:252)
... 22 more
Caused by: javassist.bytecode.BadBytecode: build
()Lorg/apache/http/impl/client/CloseableHttpClient; in org.apache.http.impl.client.HttpClientBuilder: inconsistent stack height null
at javassist.bytecode.stackmap.MapMaker.make(MapMaker.java:119)
at javassist.bytecode.MethodInfo.rebuildStackMap(MethodInfo.java:458)
at javassist.bytecode.MethodInfo.rebuildStackMapIf6(MethodInfo.java:440)
at javassist.CtBehavior.insertBefore(CtBehavior.java:800)
... 27 more
Closed. This question needs debugging details. It is not currently accepting answers.
Edit the question to include desired behavior, a specific problem or error, and the shortest code necessary to reproduce the problem. This will help others answer the question.
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I'm kinda new to Java, and I'm trying out JavaFX. I'm using NetBeans 8.2 and made a new JavaFX project. Netbeans created a sample "Hello world" app, but running it gave me this error:
Executing C:\Users\*****\Documents\NetBeansProjects\HelloWorld\dist\run875675325\HelloWorld.jar using platform C:\Program Files\Java\jdk1.8.0_20\jre/bin/java
Exception in Application start method
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at com.sun.javafx.application.LauncherImpl.launchApplicationWithArgs(LauncherImpl.java:363)
at com.sun.javafx.application.LauncherImpl.launchApplication(LauncherImpl.java:303)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at sun.launcher.LauncherHelper$FXHelper.main(LauncherHelper.java:767)
Caused by: java.lang.RuntimeException: Exception in Application start method
at com.sun.javafx.application.LauncherImpl.launchApplication1(LauncherImpl.java:875)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication$147(LauncherImpl.java:157)
at com.sun.javafx.application.LauncherImpl$$Lambda$48/752848266.run(Unknown Source)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassFormatError: Truncated class file
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:760)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:455)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:367)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$153(LauncherImpl.java:819)
at com.sun.javafx.application.LauncherImpl$$Lambda$51/1073159910.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$166(PlatformImpl.java:323)
at com.sun.javafx.application.PlatformImpl$$Lambda$45/584634336.run(Unknown Source)
at com.sun.javafx.application.PlatformImpl.lambda$null$164(PlatformImpl.java:292)
at com.sun.javafx.application.PlatformImpl$$Lambda$47/670904707.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$165(PlatformImpl.java:291)
at com.sun.javafx.application.PlatformImpl$$Lambda$46/501263526.run(Unknown Source)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
at com.sun.glass.ui.win.WinApplication._runLoop(Native Method)
at com.sun.glass.ui.win.WinApplication.lambda$null$141(WinApplication.java:102)
at com.sun.glass.ui.win.WinApplication$$Lambda$37/96639997.run(Unknown Source)
... 1 more
Exception running application helloworld.HelloWorld
Java Result: 1
Any help would be appreciated.
The key thing in that stack trace is this line:
Caused by: java.lang.ClassFormatError: Truncated class file
Anything that says Error within a stacktrace points to really severe "environmental" kind of problems.
In your case: it seems that one (or more) of the class files that your IDE generates out of java source code is simply corrupted.
Try to to simple clean and rebuild your project.
If that doesn't help (which I would find rather surprising); then I am kinda worried that your Netbeans installation itself is somehow corrupted (so, me personally, I would then completely wipe that installation and try from scratch again).
I want to use the Gremlin console for some Gremlin queries on an embedded neo4j2 database. Gremlin via Rexster is not a problem.
When I try to load the graph I get the following error message:
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4405a711' was successfully initialized, but failed to start. Please see attached cause exception
with the following stack trace:
at com.tinkerpop.blueprints.impls.neo4j.Neo4jGraph.<init>(Neo4jGraph.java:166)
at com.tinkerpop.blueprints.impls.neo4j.Neo4jGraph.<init>(Neo4jGraph.java:136)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:77)
at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrapNoCoerce.callConstructor(ConstructorSite.java:102)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:54)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:182)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:190)
at groovysh_evaluate.run(groovysh_evaluate:51)
at groovysh_evaluate$run.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:112)
at org.codehaus.groovy.tools.shell.Interpreter.evaluate(Interpreter.groovy:67)
at org.codehaus.groovy.tools.shell.Interpreter$evaluate.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.Groovysh.execute(Groovysh.groovy:152)
at org.codehaus.groovy.tools.shell.Shell.leftShift(Shell.groovy:114)
at org.codehaus.groovy.tools.shell.Shell$leftShift$0.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.ShellRunner.work(ShellRunner.groovy:88)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$work(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.work(InteractiveShellRunner.groovy:100)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSiteNoUnwrapNoCoerce.invoke(PogoMetaMethodSite.java:272)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:52)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:46)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:133)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
at org.codehaus.groovy.tools.shell.ShellRunner.run(ShellRunner.groovy:57)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$run(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.run(InteractiveShellRunner.groovy:66)
at com.tinkerpop.gremlin.groovy.console.Console.<init>(Console.java:60)
at com.tinkerpop.gremlin.groovy.console.Console.main(Console.java:102)
Caused by: java.lang.RuntimeException: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#39ba25e4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:287)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:106)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:63)
at com.tinkerpop.blueprints.impls.neo4j.Neo4jGraph.<init>(Neo4jGraph.java:156)
... 61 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#39ba25e4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:265)
... 65 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#63cd462c' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:128)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 67 more
Caused by: org.neo4j.kernel.impl.storemigration.UpgradeNotAllowedByConfigurationException: Failed to start Neo4j with an older data store version. To enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true"
at org.neo4j.kernel.impl.storemigration.ConfigMapUpgradeConfiguration.checkConfigurationAllowsAutomaticUpgrade(ConfigMapUpgradeConfiguration.java:39)
at org.neo4j.kernel.impl.storemigration.StoreUpgrader.attemptUpgrade(StoreUpgrader.java:66)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.tryToUpgradeStores(StoreFactory.java:114)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.newNeoStore(StoreFactory.java:97)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:240)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 70 more
Can someone help me get the Gremlin console working with a neo4j2 graph database?
Thanks in advance
As cybersam already mentioned the relevant part of the stacktrace is:
org.neo4j.kernel.impl.storemigration.UpgradeNotAllowedByConfigurationException: Failed to start Neo4j with an older data store version. To enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true"
If you think your datastore is on same version as the libraries you're using doublecheck the classpath for duplicates. If you have two different versions it's generally non-deterministic which one is being used.
I am struggling to set up titan with Hbase .Below are the stteps I followed,
Downloaed titan-hbase
downloaded cygwin
Installed Hbase ( referred this http://hbase.apache.org/cygwin.html)
Hbase in running in cygwin .
5.Titan is running on my windows and basic gremlin console is coming up.
Now I want to load Hbase as storage in titan .
I am not understanding how to configure in titan so that it will map to hbase (which running in cygwin shell (command prompt).
I am trying something like this on my titan console
gremlin> TitanGraph g = TitanFactory.open('conf\titan-hbase-es.properties');
I am getting below error
Could not instantiate implementation: com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager
Display stack trace? [yN]
java.lang.IllegalArgumentException: Could not instantiate implementation:
com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager
at com.thinkaurelius.titan.diskstorage.Backend.instantiate(Backend.java:355)
at com.thinkaurelius.titan.diskstorage.Backend.getImplementationClass(Backend.java:367)
at com.thinkaurelius.titan.diskstorage.Backend.getStorageManager(Backend.java:311)
at com.thinkaurelius.titan.diskstorage.Backend.(Backend.java:121)
at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1173)
at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.(StandardTitanGraph.java:75)
at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:40)
at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:29)
at com.thinkaurelius.titan.core.TitanFactory$open.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at groovysh_evaluate.run(groovysh_evaluate:56)
at groovysh_evaluate$run.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:112)
at org.codehaus.groovy.tools.shell.Interpreter.evaluate(Interpreter.groovy:67)
at org.codehaus.groovy.tools.shell.Interpreter$evaluate.call(Unknown
Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.Groovysh.execute(Groovysh.groovy:152)
at org.codehaus.groovy.tools.shell.Shell.leftShift(Shell.groovy:114)
at org.codehaus.groovy.tools.shell.Shell$leftShift$0.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.ShellRunner.work(ShellRunner.groovy:88)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$work(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.work(InteractiveShellRunner.groovy:100)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSiteNoUnwrapNoCoerce.invoke(PogoMetaMethodSite.java:272)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:52)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:46)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:133)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
at org.codehaus.groovy.tools.shell.ShellRunner.run(ShellRunner.groovy:57)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$run(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.run(InteractiveShellRunner.groovy:66)
at com.thinkaurelius.titan.tinkerpop.gremlin.Console.(Console.java:57)
at com.thinkaurelius.titan.tinkerpop.gremlin.Console.(Console.java:70)
at com.thinkaurelius.titan.tinkerpop.gremlin.Console.main(Console.java:96)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.thinkaurelius.titan.diskstorage.Backend.instantiate(Backend.java:344)
... 63 more Caused by: com.thinkaurelius.titan.diskstorage.PermanentStorageException: Failed
to create directory D:\GraphDBTitan\titan-all-0.4.4\bin\conf
itan-hbase-es.properties for local storage.
at com.thinkaurelius.titan.diskstorage.util.DirectoryUtil.getOrCreateDataDirectory(DirectoryUtil.java:24)
at com.thinkaurelius.titan.diskstorage.common.LocalStoreManager.(LocalStoreManager.java:29)
at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.(BerkeleyJEStoreManager.java:36)
... 68 more
Please someone help me to fix this .
Like remis said in the comments, installing on a Linux machine would reduce the compatibility issues. If you decide to give it a go this article contains the steps to get you started with Titan on HBase: http://blog.trackerbird.com/content/setting-up-titan-1-0-apache-hbase/.
I found the main issue under the cygwin is with the $(pwd) expression, change it to $(cygpath -aw $(pwd)) please.
I am getting this error when I launch my job. It works on my local machine but it fails if I upload war file to tomcat7 on server. The application is started but it fails at run time.
This is the code,
ProcessBuilder pb = new ProcessBuilder(commands);
File log = new File(this.logFilePath);
if (!log.exists()) {
log.getParentFile().mkdirs();
}
pb.redirectErrorStream(true);
pb.redirectOutput(Redirect.appendTo(log));
Process p = pb.start();
and the stack trace
ERROR: org.springframework.batch.core.step.AbstractStep - Encountered an error executing step eu.createBatchStep in job eu
java.lang.NoClassDefFoundError: java/lang/ProcessBuilder$Redirect
at com.stockopedia.symfony.Symfony.run(Symfony.java:105)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:132)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:120)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
at sun.proxy.$Proxy29.run(Unknown Source)
at com.stockopedia.batch.foundation.tasklets.SystemCommandTasklet.execute(SystemCommandTasklet.java:54)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:132)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:120)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
at sun.proxy.$Proxy22.execute(Unknown Source)
at org.springframework.batch.core.step.tasklet.TaskletStep$ChunkTransactionCallback.doInTransaction(TaskletStep.java:402)
at org.springframework.batch.core.step.tasklet.TaskletStep$ChunkTransactionCallback.doInTransaction(TaskletStep.java:326)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:131)
at org.springframework.batch.core.step.tasklet.TaskletStep$2.doInChunkContext(TaskletStep.java:267)
at org.springframework.batch.core.scope.context.StepContextRepeatCallback.doInIteration(StepContextRepeatCallback.java:77)
at org.springframework.batch.repeat.support.RepeatTemplate.getNextResult(RepeatTemplate.java:368)
at org.springframework.batch.repeat.support.RepeatTemplate.executeInternal(RepeatTemplate.java:215)
at org.springframework.batch.repeat.support.RepeatTemplate.iterate(RepeatTemplate.java:144)
at org.springframework.batch.core.step.tasklet.TaskletStep.doExecute(TaskletStep.java:253)
at org.springframework.batch.core.step.AbstractStep.execute(AbstractStep.java:198)
at org.springframework.batch.core.job.SimpleStepHandler.handleStep(SimpleStepHandler.java:148)
at org.springframework.batch.core.job.flow.JobFlowExecutor.executeStep(JobFlowExecutor.java:64)
at org.springframework.batch.core.job.flow.support.state.StepState.handle(StepState.java:67)
at org.springframework.batch.core.job.flow.support.SimpleFlow.resume(SimpleFlow.java:162)
at org.springframework.batch.core.job.flow.support.SimpleFlow.start(SimpleFlow.java:141)
at org.springframework.batch.core.job.flow.FlowJob.doExecute(FlowJob.java:134)
at org.springframework.batch.core.job.AbstractJob.execute(AbstractJob.java:304)
at org.springframework.batch.core.launch.support.SimpleJobLauncher$1.run(SimpleJobLauncher.java:135)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Initially I though it could be because file does not exist, but I tried creating file manually, but still getting same error.
The errors tells that it can't find class Redirect in class path.
This class is available from Java 1.7 you can check it there, so you can't use it in earlier versions on Java.
I suppose you use Java 1.7 or higher in your development environment, but tomcat is run under Java 1.6 where class Redirect and method redirectOutput(Redirect) does not exist.
So try to upgrade your java on server or use API specific to Java 1.6.