Log4j removal issue - java

I'm trying to remove Log4j from my project. The project is building sucessfully after removing but I'm getting this error while running the build.
org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/azuga]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:162)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:755)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:731)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:973)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1850)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.NoClassDefFoundError: Lorg/apache/log4j/Logger;
at java.base/java.lang.Class.getDeclaredFields0(Native Method)
at java.base/java.lang.Class.privateGetDeclaredFields(Class.java:3062)
at java.base/java.lang.Class.getDeclaredFields(Class.java:2249)
at org.apache.catalina.util.Introspection.getDeclaredFields(Introspection.java:106)
at org.apache.catalina.startup.WebAnnotationSet.loadFieldsAnnotation(WebAnnotationSet.java:269)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationFilterAnnotations(WebAnnotationSet.java:109)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationAnnotations(WebAnnotationSet.java:68)
at org.apache.catalina.startup.ContextConfig.applicationAnnotationsConfig(ContextConfig.java:336)
at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:776)
at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:307)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:95)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
... 10 more
Caused by: java.lang.ClassNotFoundException: org.apache.log4j.Logger
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1352)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1180)
... 24 more
I've tried removing dependencies I suspected to be using Log4j.

As a general advice, use a tool to manage your project's dependencies such as Gradle or Maven. These tools are capable of analyzing not only classpath dependencies but also runtime dependencies. That way, you can just see what the dependencies are - rather than suspecting.

Related

GWT Maps API V3 Core API

I'm trying to use the GWT Maps API V3 in a Spring Boot project.
I added it in gradle with no issue and wrote my code but when running, it crashes showing the following:
java.util.concurrent.ExecutionException: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Tomcat].StandardHost[localhost].StandardContext[]]
at java.util.concurrent.FutureTask.report(FutureTask.java:122) [na:1.8.0_102]
at java.util.concurrent.FutureTask.get(FutureTask.java:192) [na:1.8.0_102]
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:911) ~[tomcat-embed-core-8.5.5.jar:8.5.5]
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:890) [tomcat-embed-core-8.5.5.jar:8.5.5]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) [tomcat-embed-core-8.5.5.jar:8.5.5]
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1403) [tomcat-embed-core-8.5.5.jar:8.5.5]
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1393) [tomcat-embed-core-8.5.5.jar:8.5.5]
at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_102]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_102]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_102]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_102]
Caused by: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Tomcat].StandardHost[localhost].StandardContext[]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:167) [tomcat-embed-core-8.5.5.jar:8.5.5]
... 6 common frames omitted
Caused by: java.lang.IllegalStateException: java.lang.NullPointerException
at org.springframework.boot.context.embedded.tomcat.TomcatResources$Tomcat7Resources.addJar(TomcatResources.java:125) ~[spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
at org.springframework.boot.context.embedded.tomcat.TomcatResources.addClasspathResources(TomcatResources.java:63) ~[spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
at org.springframework.boot.context.embedded.tomcat.TomcatEmbeddedServletContainerFactory$StoreMergedWebXmlListener.onStart(TomcatEmbeddedServletContainerFactory.java:805) ~[spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
at org.springframework.boot.context.embedded.tomcat.TomcatEmbeddedServletContainerFactory$StoreMergedWebXmlListener.lifecycleEvent(TomcatEmbeddedServletContainerFactory.java:796) ~[spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:94) [tomcat-embed-core-8.5.5.jar:8.5.5]
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5087) ~[tomcat-embed-core-8.5.5.jar:8.5.5]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) [tomcat-embed-core-8.5.5.jar:8.5.5]
... 6 common frames omitted
Caused by: java.lang.NullPointerException: null
at org.springframework.boot.context.embedded.tomcat.TomcatResources$Tomcat7Resources.addJar(TomcatResources.java:122) ~[spring-boot-1.4.1.RELEASE.jar:1.4.1.RELEASE]
... 12 common frames omitted
Any idea how to use it with spring?
From this blog, try coping commons-logging.jar file to WEB-INF/lib folder. You must also have packaged the servlet-api.jar along with the other libraries in your war file. You can verify this by opening up your war file and navigating to the WEB-INF/lib folder.
Based from this post, you should not provide the servlet-api jar. The container, in your case Tomcat, is responsible for providing it at deploy time to your application. If you try to provide it as well, then issues arise due to version mismatch etc. Best practise is to just avoid packaging it. Remove it from the WEB-INF/lib.
Also according to this thread:
Your webapp has servletcontainer specific libraries like servlet-api.jar file in its /WEB-INF/lib. This is not right. Remove them all. The /WEB-INF/lib should contain only the libraries specific to the webapp, not to the servletcontainer. The servletcontainer (like Tomcat) is the one who should already provide the servletcontainer specific libraries. If you supply libraries from an arbitrary servletcontainer of a different make/version, you'll run into this kind of problems because your webapp wouldn't be able to run on a servletcontainer of a different make/version than where those libraries are originated from.

ClassNotFoundException: MysqlDataSource

(embedded Tomcat 7.0.59, gradle 2.13, HikariCP 2.4.6, mysql-connector-java 6.0.2)
I want to create connection pool (mysql) in my web application.
When I execute gradle tomcatRun, I get the following message:
java.lang.RuntimeException: java.lang.ClassNotFoundException: com.mysql.jdbc.jdbc2.optional.MysqlDataSource
at com.zaxxer.hikari.util.UtilityElf.createInstance(UtilityElf.java:89)
at com.zaxxer.hikari.pool.PoolBase.initializeDataSource(PoolBase.java:294)
at com.zaxxer.hikari.pool.PoolBase.<init>(PoolBase.java:91)
at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:101)
at com.zaxxer.hikari.HikariDataSource.<init>(HikariDataSource.java:71)
at [my package].DbContextListener.initDataSource(DbContextListener.java:40)
at [my package].DbContextListener.contextInitialized(DbContextListener.java:27)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5016)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5524)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1575)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1565)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassNotFoundException: com.mysql.jdbc.jdbc2.optional.MysqlDataSource
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1720)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1571)
at com.zaxxer.hikari.util.UtilityElf.createInstance(UtilityElf.java:76)
... 15 more
I found that tomcat may not contain dbcp-jar, so I tried to add it via gradle:
compile 'org.apache.tomcat:tomcat-jdbc:7.0.59' but nothing changed
Can anyone explain me how it should be done?

Jacoco - method code too large when using ver 0.7.6 and 0.7.5

I am trying to set up to run Jacoco agent (http://mvnrepository.com/artifact/org.jacoco/org.jacoco.agent/0.7.6.201602180812), and I am getting an exception as below.
java.lang.instrument.IllegalClassFormatException: Error while instrumenting class ...
at org.jacoco.agent.rt.internal_14f7ee5.CoverageTransformer.transform(CoverageTransformer.java:93)
at sun.instrument.TransformerManager.transform(TransformerManager.java:188)
at sun.instrument.InstrumentationImpl.transform(InstrumentationImpl.java:428)
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:760)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at org.apache.catalina.loader.WebappClassLoaderBase.findClassInternal(WebappClassLoaderBase.java:3114)
at org.apache.catalina.loader.WebappClassLoaderBase.findClass(WebappClassLoaderBase.java:1342)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1823)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1703)
at org.apache.catalina.util.Introspection.loadClass(Introspection.java:143)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationServletAnnotations(WebAnnotationSet.java:132)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationAnnotations(WebAnnotationSet.java:65)
at org.apache.catalina.startup.ContextConfig.applicationAnnotationsConfig(ContextConfig.java:415)
at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:892)
at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:386)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:117)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5405)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1574)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1564)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.IOException: Error while instrumenting class org/apache/jsp/isml2jsp/cartridges/app_005fbusiness_005fmanager/default_/product/batch/AttributeValue_002d37d0cd03a157eeffaecd90c11598827569e0327d_jsp.
at org.jacoco.agent.rt.internal_14f7ee5.core.instr.Instrumenter.instrumentError(Instrumenter.java:152)
at org.jacoco.agent.rt.internal_14f7ee5.core.instr.Instrumenter.instrument(Instrumenter.java:103)
at org.jacoco.agent.rt.internal_14f7ee5.CoverageTransformer.transform(CoverageTransformer.java:91)
... 25 more
Caused by: java.lang.RuntimeException: Method code too large!
at org.jacoco.agent.rt.internal_14f7ee5.asm.MethodWriter.getSize(MethodWriter.java:2036)
at org.jacoco.agent.rt.internal_14f7ee5.asm.ClassWriter.toByteArray(ClassWriter.java:827)
at org.jacoco.agent.rt.internal_14f7ee5.core.instr.Instrumenter.instrument(Instrumenter.java:84)
at org.jacoco.agent.rt.internal_14f7ee5.core.instr.Instrumenter.instrument(Instrumenter.java:101)
... 26 more
The Java Option to run the Jacoco agent is set as:
JAVA_OPTS=$JAVA_OPTS\ -javaagent:/myserver/tomcat/lib/jacocoagent.jar=destfile=/tmp/jacoco.exec
I am not using a Maven or Ant file to run it, and the option to run the agent is set directly in the Tomcat startup script. Can anyone please help?

can't starting Tomcat v8.0 at localhost

I tried to create/run a java web app and ran into the following error. I saw that other people have had similar problems, however, I tried what they said but they all not work.
A child container failed during start
java.util.concurrent.ExecutionException: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/CourseServer]]
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:916)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:871)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1408)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1398)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/CourseServer]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:153)
... 6 more
Caused by: java.lang.NoClassDefFoundError: org/json/JSONException
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.catalina.util.Introspection.getDeclaredFields(Introspection.java:106)
at org.apache.catalina.startup.WebAnnotationSet.loadFieldsAnnotation(WebAnnotationSet.java:256)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationServletAnnotations(WebAnnotationSet.java:132)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationAnnotations(WebAnnotationSet.java:65)
at org.apache.catalina.startup.ContextConfig.applicationAnnotationsConfig(ContextConfig.java:334)
at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:783)
at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:305)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:95)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5154)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
... 6 more
Caused by: java.lang.ClassNotFoundException: org.json.JSONException
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1308)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1142)
... 20 more
and what's in my WEB-INF/lib
Help!
add below dependency into your pom.xml
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20160212</version>
</dependency>
If you are not using maven then you have to download and add this java-json.jar to your build path
NoClassDefFoundError: org/json/JSONException means it can't find the class JSONException at runtime. Either you add it as a dependency in your pom.xml, add it to your build-path or you add the JAR to your Tomcat Lib folder.
Either way, you'll have to get the JAR containing the JSONException. Which can be found here.
I tried all the means,they all not work until I reinstall tomacat....

Tomcat can't start the app because it can't find JSONRPC2ParseException class

I have application in /var/lib/tomcat7/webapps/code I have init.java file that use json-rpc-2.0
I compile it using:
export CLASSPATH=$CLASSPATH:/path/jsonrpc2-base-1.35.jar:/path/json-smart-1.2.jar
javac init.java
it compile but when I run the app (not the servlet) I got error 404 from Tomcat and in catalina.out file there is exception:
org.apache.catalina.LifecycleException: Failed to start component [StandardEngin
e[Catalina].StandardHost[localhost].StandardContext[/code]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:154)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase
.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:87
7)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:633)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.jav
a:1114)
at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig
.java:1673)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:47
1)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: java.lang.NoClassDefFoundError: com/thetransactioncompany/jsonrpc2/JSONRPC2ParseException
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2387)
at java.lang.Class.getDeclaredFields(Class.java:1796)
at org.apache.catalina.util.Introspection.getDeclaredFields(Introspection.java:106)
at org.apache.catalina.startup.WebAnnotationSet.loadFieldsAnnotation(WebAnnotationSet.java:261)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationServletAnnotations(WebAnnotationSet.java:140)
at org.apache.catalina.startup.WebAnnotationSet.loadApplicationAnnotations(WebAnnotationSet.java:67)
at org.apache.catalina.startup.ContextConfig.applicationAnnotationsConfig(ContextConfig.java:405)
at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:881)
at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:369)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5179)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
... 11 more
Caused by: java.lang.ClassNotFoundException: com.thetransactioncompany.jsonrpc2.JSONRPC2ParseException
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1714)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1559)
... 25 more
with caused by not found com/thetransactioncompany/jsonrpc2/JSONRPC2ParseException which is in jar file.
What's happening here? How can I fix it to make it work?
This is usually the jar files are not available for Tomcat.
The best way to solve this is place the json-rpc-2.0 jar files into your Tomcat's lib folder
Update
As specified by A4L user , you can also put the jar in your web applications WEB-INF/lib as well.

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