Fast graphing library - java

I've been using Incanter for my graphing needs, which was adequate but slow for my previous needs.
Now I need to embed a graph in a JPanel. Users will need to interact with the graph (e.g. clicking on certain points which the program would need to receive and deal with) by dragging and clicking. Zooming in a out is a must as well.
I've heard about JFreeChart on other SO discussions, but I see that Incanter uses that as it's graphing engine, and it seemed somewhat slow then. It it actually fast, but perhaps Incanter is doing things that slow it down?
I'm graphing up to 2 million points (simple xy-plots, really), though generally will be graphing less. Using Matlab, this is plotted in a few seconds, but Incanter can hang for minutes.
So is JFreeChart the way to go? Or something else, given my needs?
(Also, it needs to be free, as it is for research.)

Unfortunately, general purpose graphing solutions probably aren't going to scale well to 2 million points - that's big enough that you will need something specialized if you want interactive performance.
I can see a few sensible options:
Write your own custom "plotter" function that is optimized for drawing large numbers of points. You'd have to test it, but I think you might just about get the performance you want by writing the points directly to a BufferedImage using setRGB in a tight loop. If that still isn't fast enough, you can write the points directly into a byte array and construct a MemoryImageSource.
Exclude points so that you are only drawing e.g. 10,000 points maximum. This may be perfectly acceptable as long as you only really care about the overall shape of the scatter plot rather than individual points.
Pre-render all the points into e.g. a large BufferedImage then allow users to zoom in and out / interact with this static image. You might be able to "hack" JFreeChart to do this.
If OpenGL is an option (will require native code + getting up a steep learning curve!), then drop all the points in a big vertex array and get the graphics card to do it all for you. Will handle 2 million points in real-time without any difficulty.

MathGL is fast and free (GPL) plotting library. But I never test its java interface (swig based) since I'm not familiar with java :( . So, if one can help with testing then I'll be thankful.

Related

Java2D faster Area alternative

I'm using Java2D in conjunction with apache batik to draw some fairly large svg images.
So far it is working quite nicely, but i am frustrated with the performance of areas. In particular, i have three things i want to accomplish:
merge a bunch of colliding shapes to one large area
removing a bunch of shapes from one large area
checking for colliding shapes
naively, point 1 and 2 can be accomplished with Area.add and Area.subtract.
This works, but can easily take up to twenty minutes in an average use case.
Point 3 can be accomplished by subtracting the areas from each other and checking the remaing area. Still slow, but can be sped up to be usable by using some prior spatial hashing or something similar.
Is there a better and faster way to merge/subtract Java2D areas?
If not, is there another library which can do this sort of thing faster?
unfortunately, libraries like JOGL or LWJGL do not work on a resolution independent space like svg-paths or the Java2D Paths.
You can try this: AreaX
According to the author:
The AreaX class is intended to achieve exactly the same visual results as the Area class. However several possible optimizations have been carefully implemented to reach those results faster.

jMonkey optimization similar to Java3D's

Edit: For having real-time drawing, started using lwjgl which is base of jmonkeyengine and jocl in an "interoperability" between opengl and opencl, now can calculate and draw 100k particles real-time. Maybe mantle version of jmonkey engine can cure this drawcall overhead problem.
For several days, I have been learning jMonkey engine(ver:3.0) in Eclipse(java 64 bit) and trying how to optimize a scene with using GeometryBatchFactory.optimize(rootNode); command.
Without optimization(with capability of changing spheres positions):
Okay, only 1-fps is originated from both pci-express bandwidth+jvm overhead.
With optimization(without capability to change positions of spheres):
Now it is 29 fps even with increased triangle number.
Java3D had a setCapability() method which makes a scene object be able to be read/written even in an optimized form. jMonkey engine 3.0 must be capable of this subject but I couldn't find any trace of it(searched tutorials and examples, failed).
Question: How can I set read/write position/rotation/scale capabilities of optimized nodes of a scene in jMonkey 3.0? If you cannot give an answer to first question, can you tell me why triangle numbers increase when I use optimization command? Do I have to create a new method to access the graphics card and change the variables myself(jogl maybe?)?
Scene information: 16k particles(spheres of 16x16 res) + 1 point light(and its 4096 resolutioned shadow).
I'm sure we can send several thousands of float numbers in a millisecond through pci-express with ease.
Additional info: I'm using Aparapi-kernels to update particle
positions which takes 10 milliseconds(16k * 16k interactions to
calculate forces).(does not change anything in optimized mode :( )
Can aparapi access those optimized data?
For the case of batchNode.batch(); optimization, here is 1 fps again with lessened object-numbers:
Object number is now only several hundreds but fps is still at 1!
Sending just sphere positions to gpu and letting it calculate the vertex positions could be better than calculating vertexes on cpu plus sending huge data to gpu.
No-one here to help? Already tried batchNode but did not help enough.
I dont want to change 3d api because jMonkey people already reinvented the wheel and I'm happy with current situation. Just trying to squeeze a little more performance(canceling shadows gives %100 speed but quality is important too!).
This java program will become an asteroid-impact scene simulator(there will be choice of asteroid size,mass,speed,angle) with marching-cubes algorithm with LOD(will be millions of particles).
Marching-cubes algorithm would decrease the triangle numbers greatly. If you couldnt give any answer the question, any marching-cubes(or any O(n) convex hull) algorithm for java will be accepted! Data: x,y,z arrays as source and triangle-strip-array as target(iso-surface mesh points)
Thanks.
Here are some samples about the stream(with a much lower resolution):
1)Collapsing of a cube-shaped rock-group by gravitation:
2)Exclusion force starts to show itself:
3)Exclusion force + gravitation makes the group form a more smooth shape:
4)Group forms a sphere(as expected):
5)Then, a big stellar body approaches:
6)About to touch:
7)The moment of impact:
With help of Barnes-Hutt algorithm and a truncated potential, particle numbers will be 10x(maybe 100x) more.
Rather than Marching-Cubes algorithm, a ghost cloth which wraps the nbody can give a low-resolutioned hull(more easier than BH but need more computation)
Ghost cloth will be affected by nbody(gravity + exclusion) but nbody will not be affected by cloth which wraps it. Nbody wont be rendered but cloth mesh will be rendered with lower triange count.
If MC or above works, this will let the program render a wrapping-cloth for ~200x more particles.
So sorry....
You can batch all Geometries in a scene (or a subnode) that remains static.
Batching means that all Geometries with the same Material are combined into one mesh. This optimization only has an effect if you use only few (roughly up to 32) Materials total. The pay-off is that batching takes extra time when the game is initialized
The change in triangles therefore is because they have been all assembled into one mesh.... The only suggestion if this is necessary, is trying to get the mesh and altering points on it, but at that point I don't think it makes sense.
Perhaps try a different optimization method.
Good luck, haven't used JMonkey in a bit, but glad to see others do and its continued growth!
EDIT
BTW, a way to minimize the math might be to use half a sphere of cubes, an impact on the earth likely wouldn't affect the other side (unless the sphere isn't the earth but already a small sample of the earth taken as a sphere)...
Perhaps try a 2d shape as the impact surface, though I know this won't be your best choice, it might give you an idea of how the number of shapes might have an affect and how grand. If it does then an avenue might be to consider how to remove some of the particles, if it doesn't you need not worry. I am almost sure it will.
Finally:
Perhaps don't render in real time? Take a minute to draw the frames to a buffer then play, by the time your playing you will have another 40 or so frames etc... and maybe approx 30 secs worth is all you will need.
There is a pretty solid set of documentation within the JMonkeyEngine wiki which talks quite a bit about how to utilize the transformations you are referring to, which can be found here: Advanced Spatial Concepts.
In addition, there is quite a bit of information regarding the meshes and their rendering which you can view here: Polygon Meshes.

Implementing a 'Waterfall' simulation in Java

I would like to implement a visualisation of this video in Java as experience to help me understand all of the 'troubles' in creating visualisations. I have some experience in OpenGL, and a good understanding of how to handle the physics involved. However, if anybody knows of any good game engines that may help (or at least do some of the heavy lifting involved in creating a visualisation of the above) I would be grateful.
Also, I noticed that the linked video must use many separate jets in order to operate in the way it does. Is it likely that it was created using something a little lower level such as C? Is it possible to use a higher level language like Java to control such a system?
Honestly, if you want to implement "just that", I think using a game engine is overkill. Just implement a simple particle engine on your own and you are done.
Seriously, that problem is not so difficult, any language can be used for it. The basic principle behind it is the same as behind steam organs or self player pianos. You have an input data that shows what the pattern to play is and you advance it in a given time.
Here is how I would build the basic control system. You take a black and white image. The width is exactly as wide as the number of "emitters" and the length is as long as the pattern needs to be. You read the image and start at the first line. You walk through each pixel in that line and if the pixel is black you emit a drop and if the pixel is white you don't. You then move in a given interval (maybe 25ms) to the next line and set the emitters accordingly.
The cool thing with images is that you can simply paint them in any graphic program. To get the current time to work you render the time into a image buffer in memory, then pass that into the above code. (You even get fonts if you like...)
You can use jMonkeyEngine.
JAVA OPEN GL GAME ENGINE

What can we use for rapid display and update of large numbers of simple objects?

We think there are potentially a number of technologies that might work for us - Java3D, Google Sketchup, JavaFX or gaming framework, and probably many we're not familiar with.
We're getting ready to build an app that will need to be able to display large numbers of simple objects in three dimensions. Say, a couple thousand wireframe boxes, and allow us to pan, rotate and zoom easily and smoothly. We're primarily a java shop, so a java solution would probably be preferred over other technologies, just because that's what we're strong in.
We want drag&drop and object resizing with the mouse. We also want to re-position the boxes or other objects based on event feeds from an external application. So, we might want to re-position hundreds of the boxes a few times a second.
What technologies can actually get this done?
Our legacy app does this with Java 3D, but we'd like to consider what's suitable for the next generation version.
We like something that's a littler higher-level than Java3d.
Edit: In the end, we used jMonkeyEngine, and that did the trick for us.
A few thousand wire-frame boxes can be rendered at many frames per second with just about anything. Using 3d hardware acceleration, these could also be rendered as solid in a z-buffer at completely interactive frame rates. I don't think the image you describe is going to help in making the decision. Pick something that's easy to use.

Scraping data from Flash (Games)

I saw this video, and I am really curious how it was performed. Does anyone have any ideas? My intuition is that he scraped pixels from the screen (one per 'box'), and then fed that into some program to determine the next move.
Is scraping pixel-by-pixel the way to do this, or is there a better way? I am looking to do something similar with either Java or Python.
Thanks
Probably that's the most reliable way. There are ways to inspect what is happening inside a process - looking directly at its internal state and memory - but they are platform-specific and very prone to misbehaving because your dealing with a slightly different version of something - that includes a different flash version as well as a different version of the app. Those methods are more often used for "trainers" for exe games, where there's typically only one or two versions of the executable to worry about.
Lots of screen shots, comparing, figuring out reliable indicator pixels seems the way to go - plus keeping track of what you expect to happen, of course. When the app is running, it should work from a screenshot at a time (hopefully ensuring a consistent picture, with no half-updated views) and then test the minimum number of pixels needed using (perhaps) a decision tree.
There are ways to automate construction of efficient decision trees, but it's probably easier to do it manually based on comparing screen shots. In this case, since Tetris normally creates all new pieces at the same position, with a 1:1 relationship between colour and shape, you can probably determine the shape and position of a new piece from a single pixel colour - so "decision tree" is probably the wrong term, really, in this case - though there are other things the bot needs to read from the screen.
What's more interesting is the logic to actually make gameplay decisions, since that bot clearly isn't just slotting every piece into the most immediately obvious position, but deliberately aiming to create opportunities to clear 3 or 4 rows at a time.
Yes, i think he scanned the pixels. Actually it should be very simple because you only need to scan the new shape for each move. With that information you can locally calculate the grid and further use it for your AI calculations.

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