rJava startMainLoop() function kills Java operations - java

I've developed an interface that allows a user to load and manipulate data. The GUI is developed in Java and all the computational stuff is done in the background by R, linking the two with jri. The idea is that the user doesn't have to have any knowledge of R to use it, it's all options and buttons. However, i'd like to give the user the option to write some code if necessary. So here is my problem:
If I use the following code to start the Rengine and not let the user interact via console, everything works fine:
Rengine re=new Rengine(null, false, new TextConsole());
But if I use this:
Rengine re=new Rengine(null, true, new TextConsole());
The functionality of the gui doesnt work. I tried using the
re.startMainLoop();
function after the data was loaded. I was able to manipulate the data from the comand line in R, for example I could make a new variable from a column of the data loaded:
newVariable<-data$column1
But yet again, I couldn't use the gui anymore. Has anyone got any ideas or explainations as to why this is?
Thanks in advance,
Aran

Fundamentally, if REPL is not running, R is simply used via eval calls from your code. You have control at all times, except during the actual evaluation. That is the most common use, because you can do pretty much anything that way.
The moment you enable the event loop (REPL), you have to implement the callback methods that are used by the loop. By design R surrenders the control only by calling the rReadConsole callback which you have to implement. The example TextConsole works only as a demo, it uses blocking call (readLine()) to wait so you definitely don't want to use that in your GUI. You'll have to implement all callbacks correspondingly to react to your GUI's elements (wait in ReadConsole for your GUI to wake it up from a separate thread, dispatch WriteConsole to your elements etc.). You can have a look at JGR how it's done properly. Unless you are really building a general purpose R GUI, I wouldn't go into that trouble ...
(PS: please use stats-rosuda-devel mailing list for rJava/JRI questions - you get answers much faster)

Related

What is a CompoundCallable?

I'm working with python scripts in Inductive Automation's Ignition HMI (java backend) software. I'm trying to write a script that locates other scripts that are tied to certain objects. Currently I have
result = window.getRootContainer().getComponent("Group 1").getComponent("TheObject").mouseClicked
which gets the window displaying my object, enters the root container of that object, then the group that the object is in and then finally the script tied to the mouseClicked event on TheObject. When I run this and print the result, I don't get an error, but:
<CompoundCallable with 0 callables>
Has anyone seen this before? Does anyone know what I may need to change in my first line of code to access the actual data stored in the mouseClicked script?
Looks like there is no code associated with the mouseClicked event of that object.
CompoundCallable is a "composition of callables", something callable that calls multiple callables - kind of a callable container. It is used to allow registering multiple functions to be called in a single event handler.
However your CompoundCallable contains zero callables. That means nothing will be called if you call it.
If I understand what you're asking, I don't believe you'll be able to access the data that is in that script (variables, etc.). You could have the mouseClicked script write data to something else in order to access data. There are multiple possibilities for that: Custom Window Property, Custom Component Property, or a tag.

Agent in JADE behaviour not working

I'm trying to create a game where JADE Agents are the 'enemies' and they chase a player around a maze.
So far I have:
MazeView.java (uses Swing to paint various things on the screen, and lets the user interact through button presses)
Enemy.java (a JADE agent that will have behaviours like search, pursue, etc.)
And a few other classes doing things like generating the actual maze data structure etc.
My problem is that, while I can instantiate an Agent and paint it on the screen, for some reason I can't add any behaviours. For example, if I wanted something like this (in Enemy.java):
protected void setup() {
// Add a TickerBehaviour that does things every 5 seconds
addBehaviour(new TickerBehaviour(this, 5000) {
protected void onTick() {
// This doesn't seem to be happening?
System.out.println("5 second tick... Start new patrol/do something?");
myAgent.addBehaviour(new DoThings());
}
}); // end of addBehaviour
System.out.println("End of setup()...");
} // end of setup
When I run the code, no errors are thrown, and I can see "End of setup()..." displayed in console. So for some reason it's just not going into the addBehaviour() method at all. Even if the DoThings() behaviour didn't work (right now it just prints a message), it should at least display the "5 second tick" message before throwing an error. What is going wrong here?
I think it could be something to do with the fact that currently there is no concept of 'time' in my maze. The user presses a key, and THEN processing happens. So having an agent that does things every 5 seconds might not work when there is no real way to facilitate that in the maze? But I'm still confused as to why it just skips addBehaviour() and I don't get an error.
A possible solution might be to re-implement my maze as a constant loop that waits for input. Would that allow a concept of 'time'? Basically I'm not sure how to link the two together. I am a complete beginner with JADE.
Any ideas would be appreciated. Thanks!
I've never used Jade, but my first thought was that you are adding behaviors and then assuming that Jade will decide to run them at some point. When you say that you never see your behaviors activate, it strengthened that hypothesis.
I looked at the source and sure enough, addBehaviour() and removeBehaviour() simply add and remove from a collection called myScheduler. Looking at the usages, I found a private method called activateAllBehaviours() that looked like it ran the Behaviours. That method is called from the public doWake() on the Agent class.
I would guess that you simply have to call doWake() on your Agent. This is not very apparent from the JavaDoc or the examples. The examples assume that you use the jade.Boot class and simply pass the class name of your agent to that Boot class. This results in the Agent getting added to a container that manages the "waking" and running of your Agents. Since you are running Swing for your GUI, I think that you will have to run your Agents manually, rather than the way that the examples show.
I got more curious, so I wrote my own code to create and run the Jade container. This worked for me:
Properties containerProps = new jade.util.leap.Properties();
containerProps.setProperty(Profile.AGENTS, "annoyer:myTest.MyAgent");
Profile containerProfile = new ProfileImpl(containerProps);
Runtime.instance().setCloseVM(false);
Runtime.instance().createMainContainer(containerProfile);
This automatically creates my agent of type myTest.MyAgent and starts running it. I implemented it similar to your code snippet, and I saw messages every 5 seconds.
I think you'll want to use setCloseVM(false) since your UI can handle closing down the JVM, not the Jade container.

Understanding Android's webview addjavascriptinterface

I know that to interact from Javascript to Java you have to inject a Java object using the addjavascriptInterface method in webview.
Here is the problem I am facing.
I register a java object using addJavascriptInterface method to be available in my JS.
I inject few JS in the webview using webview.loadURL("javascript:XXX");
I send a JS event when I am done with injecting the JS.
The problem is that if immediately after step 1, if I execute the following Javascript:
mWebView.loadUrl("javascript:if(window.myobject) console.log('myobject found---------'); else {console.log('myobject not found----');}");
I get "myobject not found" in my console's log.
I want to know that if there is some time before I can access my object and if so, how do I get to know how much time should I wait to call my object?
I want to know that if there is some time before i can access my object
Yes, I think there is a delay, because WebView.addJavascriptInterface will run in the WebView's internal worker thread. Perhaps you've thought about this, and realized that WebView has to maintain at least one worker thread to do asynchronous network IO. Maybe you also noticed these threads in DDMS while using a WebView.
It turns out that it also uses a thread to do work for a number of other public methods. I really wish the docs from Google made this clearer! But I hope I can help and show you how I tried to confirm this for myself.
Follow me as I take a look at the source for WebView. It's reasonably readable, even if you can't follow exactly what's going on, it's possible to trace through answer some questions with respect to threads.
You can download the Android framework source through the SDK manager tool, but it's also mirrored on Github, so that's what I've linked to here. I guessed and picked a tag that's close to some version of ICS. It's not hard to find WebView.addJavascriptInterface. I just Googled "WebView.java site:github.com/android".
The method WebView.addJavascriptInterface sends a message to an instance of WebViewCore:
mWebViewCore.sendMessage(EventHub.ADD_JS_INTERFACE, arg);
In WebViewCore.java there are a bunch of overloaded methods called sendMessage, but we don't really need to know which exactly is being called, since they do pretty much the same thing. There's even a nice comment to give us a hint that we're in the right place! All of them are delegating to an instance of EventHub which is some inner class. This method turns out to be synchronized, and is sending a message to an instance of Handler, which is a good indication that this is probably running in another thread, but for completeness sake, let's find out!
That Handler is instantiated in EventHub.transferMessages which is called from WebViewCore.initialize. There are a few more hops here, but eventually I found out that this is called from run in WebCoreThread (subclass of Runnable), which is instantiated along with a new Thread right here.
What an adventure! So, even though I really can't say for sure what's going on with all these moving parts, I am pretty confident to say that this method is not synchronous, and sends a message to the WebView's worker thread. I hope that makes sense!
if so, how do i get to know how much time should i wait to call my object?
Unfortunately, I don't know the answer to this. I was researching this exact issue and found this question on StackOverflow in the course of my Googling. I think you have the following options, some of which are nicer or easier than others:
1) Just Thread.sleep for 100 ms or something between addJavascriptInterface and loadUrl("javascript:..."). Blech, I don't like this, but it is potentially the easiest.
2) Another possibility is that you could call WebView.loadUrl with a snippet of JavaScript that specifically tests if the interface is set, and catches the ReferenceError that is thrown if it's not set yet. However, as you might have guessed, this kind of involves adding a JavaScript interface to the WebView!
3) Call WebView.setWebChromeClient instead, and catch JavaScript's alert() or console.log instead. From my experiments, this method is synchronous, so there is no delay. (I have confirmed this in source, but I'll leave details as an exercise for the reader) You should probably come up with some special string to call alert with and check for it inside onJsAlert, so you aren't just catching all alert()s.
Sorry for the length of this answer, I hope that helps. Good luck!
Ensure your Javascript objects declared in your HTML / Javascript that you need to access from Java are declared global otherwise they will most likely be collected. I have code that does this (where Android is my interface added with addJavascriptInterface):
<script>
var cb = function(location) {
alert('location is ' + location);
}
Android.getLocation('cb');
</script>
The getLocation method invokes Android's LocationManager.requestSingleUpdate which then invokes the callback when the LocationListener fires.
Without the "var" I find that by the time the location lookup invokes the callback the callback function has been garbage collected.
(copied from my response on a similar question)
I've taken Jason Shah's and Mr S's implementation as the building block for my fix and improved upon it greatly.
There's just far too much code to put into this comment I'll just link to it.
Details: http://twigstechtips.blogspot.com/2013/09/android-webviewaddjavascriptinterface.html
Source: https://github.com/twig/twigstechtips-snippets/blob/master/GingerbreadJSFixExample.java
Key points are:
Applies to all versions of Gingerbread (2.3.x)
Calls from JS to Android are now synchronous
No longer have to map out interface methods manually
Fixed possibility of string separators breaking code
Much easier to change JS signature and interface names

Questions: controlling a Swing GUI from an external class and separating logic from user interface

UPDATE: I'm using Netbeans and Matise and it's possible that it could be Matise causing the problems I describe below.
UPDATE 2: Thanks to those who offered constructive suggestions. After rewriting the code without Matise's help, the answer offered by ignis worked as he described. I'm still not sure how the code the Netbeans code generator interfered.
Though I've been programming in Java for awhile I've never done any GUI programming until now. I would like to control a certain part of my program externally (updating a jTextArea field with output from an external source) without requiring any user action to trigger the display of this output in the jTextArea.
Specifically, I want this output to begin displaying on startup and to start and stop depending on external conditions that have nothing to do with the GUI or what the user is doing. From what I understand so far you can trigger such events through action listeners, but these action listeners assume they are listening for user activity. If I must use action listeners, is there a way to trick the GUI into thinking user interaction has happened or is there a more straightforward way to achieve what I want to do?
Also, I'd really like to know more about best practices for separating GUI code from the application logic. From the docs I've come across, it seems that GUI development demands more of a messy integration of logic and user interface than, say, a web application where one can achieve complete separation. I'd be very interested in any leads in this area.
There is no need to use listeners. GUI objects are just like any other objects in the program, so actually
you can use the listener pattern in any part of the program, even if it is unrelated to the GUI
you can invoke methods of objects of the GUI whenever you want during the program execution, even if you do not attach any listeners to the objects in the GUI.
The main "rule" you must follow is that every method invocation performed on objects of the GUI must be run on the AWT Event Dispatch Thread (yes, that's true for Swing also).
http://download.oracle.com/javase/tutorial/uiswing/concurrency/dispatch.html
So you must wrap code accessing the GUI objects, into either
javax.swing.SwingUtilities.invokeLater( new Runnable() { ... } )
or
javax.swing.SwingUtilities.invokeAndWait( new Runnable() { ... } )
http://download.oracle.com/javase/6/docs/api/javax/swing/SwingUtilities.html
About "separating GUI code from the application logic": google "MVC" or "model view controller". This is the "standard" way of separating these things. It consists in making the GUI code (the "view") just a "facade" for the contents (the "model"). Another part of the application (the "controller") creates and invokes the model and the view as needed (it "controls" program execution, or it should do that, so it is named "controller"), and connects them with each other.
http://download.oracle.com/javase/tutorial/uiswing/components/model.html
For example, a JFoo class in the javax.swing package, that defines a Swing component, acts as the view for one or more FooModel class or interface defined either under javax.swing or one of its subpackages. You program will be the "controller" which instantiates the view and an implementation of the model properly (which may be one of the default implementations found under those packages I mentioned, or a custom implementation defined among your custom packages in the program).
http://download.oracle.com/javase/1.4.2/docs/api/javax/swing/package-summary.html
That's a really good question, IMHO... one I asked a couple of years ago on Sun's Java Forums (now basically defunct, thanx to Oracle, the half-witted pack of febrile fiscal fascists).
On the front of bringing order to kaos that is your typical "first cut" of an GUI, Google for Swing MVC. The first article I read on the topic was JavaWorld's "MVC meets Swing". I got lucky, because it explains the PROBLEMS as well as proposes sane solutions (with examples). Read through it, and google yourself for "extended reading" and hit us with any specific questions arrising from that.
On the "simulated user activity" front you've got nothing to worry about really... you need only observe your external conditions, say you detect that a local-file has been updated (for instance) and in turn "raise" a notification to registered listener(s)... the only difference being that in this case you're implementing both the "talker" and the "listener". Swings Listener interface may be re-used for the messaging (or not, at your distretion). Nothing tricky here.
"Raising" an "event" is totally straight forward. Basically you'd just invoke the "EventHappened" method on each of the listeners which is currently registered. The only tricky bit is dealing with "multithreaded-ness" innate to all non-trivial Swing apps... otherwise they'd run like three-legged-dogs, coz the EDT (google it) is constantly off doing everything, instead of just painting and message brokering (i.e. what it was designed for). (As said earlier by Ignis) The SwingUtilies class exposes a couple of handy invoke methods for "raising events" on the EDT.
There's nothing really special about Swing apps... Swing just has a pretty steep learning curve, that's all, especially multithreading... a topic which I had previously avoided like the plague, as "too complicated for a humble brain like mine". Needless to say that turned out to be a baseless fear. Even an old idiot like myself can understand it... it just takes longer, that's all.
Cheers. Keith.
This doesn't exactly answer your question, but you might be interested in using Netbeans for Java GUI development. You can use GUI in Netbeans to do Java GUI development.
Here's a good place to get started -
http://netbeans.org/kb/trails/matisse.html

Does Mediator Pattern work in this situation?

So for my current project, there are basically three main Java classes:
GUI
Instant Messaging
Computation
Essentially, there needs to be full communication, so we've decided to use the mediator approach rather than than allow the GUI to run the entire project.
Basically, the mediator is going to encapsulate the communication. The problem we've run into is how to allow the GUI components to update without building a ton of methods for the mediator to call anytime something completes.
Ex. Say the GUI wants to log in the user, it goes through the mediator to create a thread and log in, but then the mediator has to relay the success/failure back to GUI as well as update a status message.
The other issue is things that need to update the GUI but do not need the moderator. Is it practical to just allow the GUI to create an instance of that class and run it or should everything go through the mediator?
Our original design just had the GUI managing everything, but it really killed reusability. Is there a better design method to use in this case?
If you're finding Observer to bring too much overhead, Mediator may be the best way to go. I definitely think that you shouldn't have the GUI run the show. If you're going to use the Mediator pattern, the mediator itself should be in charge. Something you might consider is a variant of the Command pattern. If you were using Ruby, I might recommend passing function callbacks around as a means of avoiding having the mediator contact the GUI for every little thing. But since it's Java, some form of encapsulating an action in Command pattern style may help.
If you don't want the callback/notification to be triggerd by the mediator, you can inject the callback into the login function and have login call it when it finishes.
I don't know how you would go about injecting the callback in Java, though. In a language where functions are first class citizens, you could just pass the function, but you're in Java so I guess you will have to use the command pattern as kmorris suggested.
You might also try having the GUI give the mediator a callback object that handles retrieving return values or setting whatever values you need (a version of the Command pattern). There would then be one per call from the GUI to the mediator.
Another thought is to group the methods the mediator calls into semantically related chunks. In particular if the mediator has sections where it tends to call several GUI methods in a row:
gui.a()
gui.b()
gui.c()
you can create a single method that handles the result of calling all three. The advantage of semantically grouped methods (i.e. setFileInformation over setFileMenu, setTab, etc.) is also then if you need to change the GUI, the contents of the methods might change, but the call the mediator makes may not.

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