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Java.lang.NullPointerException on Debug?

This is a little bit of my project code:
public void render(int[] pixels, int offset, int row) {
for (int yTile = yOffset <<3; yTile <= (yOffset + height) >>3; yTile++) {
int yMin = yTile * 8 - yOffset;
int yMax = yMin + 8;
if (yMin < 0) yMin = 0;
if (yMax > height) yMax = height;
for (int xTile = xOffset <<3; xTile <= (xOffset + width) >>3; xTile++) {
int xMin = xTile * 8 - xOffset;
int xMax = xMin + 8;
if (xMin < 0) xMin = 0;
if (xMax > width) xMax = width;
int tileIndex = (xTile &(MAP_WIDTH_MASK)) + (yTile &(MAP_WIDTH_MASK)) * MAP_WIDTH;
for (int y = yMin; y <yMax; y++) {
int sheetPixel = ((y + yOffset) & 7) * sheet.width + ((xMin + xOffset) & 7);
int tilePixel = offset + xMin + y * row;
for (int x = xMin; x < xMax; x++) {
int colour = tileIndex * 4 + sheet.pixels[sheetPixel++];
pixels[tilePixel++] = colours[colour];
}
}
}
}
}
}
When I run my project, it gives me an error on this line:
int colour = tileIndex * 4 + sheet.pixels[sheetPixel++];
Can you please tell me how can I can fix this error?

In your code, I did not see where sheet is defined.
Try change it
int colour = tileIndex * 4 + pixels[sheetPixel++];
I assume you are trying to access the value from int[] pixels passing as a parameter in the function call.

What is happening in this pixel-rendering algorithm?

I just went across some code on how to draw a pixel array on top of another pixel array that looks like this:
public class Bitmap {
private int[] pixels;
private int w, h;
public void draw(Bitmap b, int xp, int yp) {
int x0 = xp;
int x1 = xp+b.w;
int y0 = yp;
int y1 = yp+b.h;
if(x0 < 0) x0 = 0;
if(x1 > w) x1 = w;
if(y0 < 0) y0 = 0;
if(y1 > h) y1 = h;
for (int y = y0; y < y1; y++) {
int sp = (y - yp) * b.w - xp;
int dp = (y) * w;
for (int x = x0; x < x1; x++) {
int c = b.pixels[sp + x];
if (c < 0) pixels[dp + x] = b.pixels[sp + x];
}
}
}
}
As You can see, one is able to draw a Bitmap object on specific coordinates on top of another Bitmap.
The thing I don't get are the two for loops. I know, that the outer for loop is the y axis of the Bitmap drawn, and starts the inner for loop to draw the x axis of the Bitmap.
Now I came over this:
int sp = (y - yp) * b.w - xp;
int dp = (y) * w;
What exactly do sp and dp stand for? And what does 'c' mean later on in
int c = b.pixels[sp + x];
if (c < 0) pixels[dp + x] = b.pixels[sp + x];
?
Thanks in advance, best regards

Given the algorithm, we can guess what the original author was thinking:
sp is "source position": the start of the row in the source bitmap
dp is "destination position": the start of the row in the destination bitmap
c is "color": the source pixel value (where negative values are transparent).

applying window level functionality on CT images in DIOCM

I am trying to implement window level functionality( To apply bone, brain, lung etc on CT) for DICOM images in my application and implemented formula as per the DICOM specification.
I am changing pixel values based on below formula and creating a new image, but images are becoming blank. What am doing wrong and is this correct way to do this. Please help :(:( Thanks
BufferedImage image = input image;
double w = 2500; // Window width
double c = 500; // window Center
double ymin = 0;
double ymax = 255;
double x = 0;
double y = 0;
double slope = dicomObject.get(Tag.RescaleSlope).getFloat(true);
double intercept = dicomObject.get(Tag.RescaleIntercept).getFloat(true);
int width = image.getWidth();
int height = image.getHeight();
double val = c - 0.5 - (w - 1) / 2;
double val2 = c - 0.5 + (w - 1) / 2;
for (int m = 0; m < height; m++) {
for (int n = 0; n < width; n++) {
int rgb = image.getRGB(n, m);
int valrgb = image.getRGB(n, m);
int a = (0xff000000 & valrgb) >>> 24;
int r = (0x00ff0000 & valrgb) >> 16;
int g = (0x0000ff00 & valrgb) >> 8;
int b = (0x000000ff & valrgb);
x = a + r + g + b;
if (x <= val)
y = ymin;
else if (x > val2)
y = ymax;
else {
y = ((x - (c - 0.5)) / (w - 1) + 0.5) * (ymax - ymin)+ ymin;
}
y = y * slope + intercept;
rgb = (int) y;
image.setRGB(n, m, rgb);
}
}
String filePath = "out put fileName";
ImageIO.write(image, "jpeg", new File(filePath));

First of all whats in your BufferedImage image ?
There are three steps you want to take from raw (decopressed) pixel data:
Get stored values - apply BitsAllocated, BitsStored, HighBit transformation. (I guess you image already passed that level)
Get modality values - thats your Slope, Intercept transformation. Ofter this transformation, your data will be in Hounsfield Units for CT.
Then you apply WW/WL (Value Of Interest) transformation, which will transform this window of walues into grayscale color space.
EDIT:
You've got to tell me where did you get "input image" from? After decompression pixel data should be in a byte array of size byte[width*height*2] (for CT Image BitsAllocated is always 16, thus *2). You can get stored values like this:
ushort code = (ushort)((pixel[0] + (pixel[1] << 8)) & (ushort)((1<<bitsStored) - 1));
int value = TwosComplementDecode(code);

Java, Colours of a buffered image are completely different to the original image

I am trying to add some texture to my game. I am running into some problems getting the image to display properly.
This is what the texture should look like, just a boring black square:
And this is what I get. A little bit of black with blue lines.
This is the code I used to import the image. The BufferedImage is set to Type_INT_RGB:
package com.mime.minefront.graphics;
import java.awt.image.BufferedImage;
import javax.imageio.ImageIO;
public class Texture {
public static Render floor = loadBitmap("/textures/floorb.png");
public static Render loadBitmap(String fileName) {
try {
BufferedImage image = ImageIO.read(Texture.class.getResource(fileName));
int width = image.getWidth();
int height = image.getHeight();
Render result = new Render(width, height);
image.getRGB(0, 0, width, height, result.pixels, 0, width);
return result;
} catch (Exception e) {
System.out.println("CRASH!");
throw new RuntimeException(e);
}
}
}
Any help or advice would be great. I have tried to search for the answer but with no luck.
This is my Render class.
package com.mime.minefront.graphics;
public class Render {
public final int width;
public final int height;
public final int[] pixels;
public Render(int width, int height) {
this.width = width;
this.height = height;
pixels = new int[width * height];
}
public void draw(Render render, int xOffset, int yOffset) {
for (int y = 0; y < render.height; y++) {
int yPix = y + yOffset;
if (yPix < 0 || yPix >= height) {
continue;
}
for (int x = 0; x < render.width; x++) {
int xPix = x + xOffset;
if (xPix < 0 || xPix >= width) {
continue;
}
int aplha = render.pixels[x + y * render.width];
if (aplha > 0) {
pixels[xPix + yPix * width] = aplha;
}
}
}
}
}
and this is my Render3D class
package com.mime.minefront.graphics;
import com.mime.minefront.Game;
import com.mimi.minefront.input.Controller;
import com.mimi.minefront.input.InputHandler;
import java.awt.Robot;
import java.util.Random;
public class Render3D extends Render {
public double[] zBuffer;
private double renderDistance = 5000;
private double forward, right, up, cosine, sine;
public Render3D(int width, int height) {
super(width, height);
zBuffer = new double[width * height];
}
public void floor(Game game) {
double floorPosition = 8;
double cellingPosition = 8;
forward = game.controls.z;
right = game.controls.x;
up = game.controls.y;
double walking = Math.sin(game.time / 6.0) * 0.5;
if (Controller.crouchWalk) {
walking = Math.sin(game.time / 6.0) * 0.25;
}
if (Controller.runWalk) {
walking = Math.sin(game.time / 6.0) * 0.8;
}
double rotation = 0;//Math.sin(game.time / 20) * 0.5; //game.controls.rotation;
cosine = Math.cos(rotation);
sine = Math.sin(rotation);
for (int y = 0; y < height; y++) {
double celling = (y - height / 2.0) / height;
double z = (floorPosition + up) / celling;
if (Controller.walk) {
z = (floorPosition + up + walking) / celling;
}
if (celling < 0) {
z = (cellingPosition - up) / -celling;
if (Controller.walk) {
z = (cellingPosition - up - walking) / -celling;
}
}
for (int x = 0; x < width; x++) {
double depth = (x - width / 2.0) / height;
depth *= z;
double xx = depth * cosine + z * sine;
double yy = z * cosine - depth * sine;
int xPix = (int) (xx + right);
int yPix = (int) (yy + forward);
zBuffer[x + y * width] = z;
pixels[x + y * width] = //((xPix & 15) * 16 | ((yPix % 15) * 16) << 8);
Texture.floor.pixels[xPix & 7] + (yPix & 7) * 8;
if (z > 500) {
pixels[x + y * width] = 0;
}
}
}
}
public void renderWall(double xLeft, double xRight, double zDistance, double yHeight) {
double xcLeft = ((xLeft) - right) * 2;
double zcLeft = ((zDistance) - forward) * 2;
double rotLeftSideX = xcLeft * cosine - zcLeft * sine;
double yCornerTL = ((-yHeight) - up) * 2;
double yCornerBL = ((+0.5 - yHeight) - up) * 2;
double rotLeftSideZ = zcLeft * cosine + xcLeft * sine;
double xcRight = ((xRight) - right) * 2;
double zcRight = ((zDistance) - forward) * 2;
double rotRightSideX = xcRight * cosine - zcLeft * sine;
double yCornerTR = ((-yHeight) - up) * 2;
double yCornerBR = ((+0.5 - yHeight) - up) * 2;
double rotRightSideZ = zcRight * cosine + xcRight * sine;
double xPixelLeft = (rotLeftSideX / rotLeftSideZ * height + width / 2);
double xPixelRight = (rotRightSideX / rotRightSideZ * height + width / 2);
if (xPixelLeft >= xPixelRight) {
return;
}
int xPixelLeftInt = (int) (xPixelLeft);
int xPixelRightInt = (int) (xPixelRight);
if (xPixelLeftInt < 0) {
xPixelLeftInt = 0;
}
if (xPixelRightInt > width) {
xPixelRightInt = width;
}
double yPixelLeftTop = (yCornerTL / rotLeftSideZ * height + height / 2);
double yPixelLeftBottom = (yCornerBL / rotLeftSideZ * height + height / 2);
double yPixelRightTop = (yCornerTR / rotRightSideZ * height + height / 2);
double yPixelRightBottom = (yCornerBR / rotRightSideZ * height + height / 2);
double tex1 = 1 / rotLeftSideZ;
double tex2 = 1 / rotRightSideZ;
double tex3 = 0 / rotLeftSideZ;
double tex4 = 8 / rotRightSideZ - tex3;
for (int x = xPixelLeftInt; x < xPixelRightInt; x++) {
double pixelRotation = (x - xPixelLeft) / (xPixelRight - xPixelLeft);
double xTexture= (int) ((tex3+tex4*pixelRotation)/tex1+(tex2-tex1)*pixelRotation);
double yPixelTop = yPixelLeftTop + (yPixelRightTop - yPixelLeftTop) * pixelRotation;
double yPixelBottom = yPixelLeftBottom + (yPixelRightBottom - yPixelLeftBottom) * pixelRotation;
int yPixelTopInt = (int) (yPixelTop);
int yPixelBottomInt = (int) (yPixelBottom);
if (yPixelTopInt < 0) {
yPixelTopInt = 0;
}
if (yPixelBottomInt > height) {
yPixelBottomInt = height;
}
for (int y = yPixelTopInt; y < yPixelBottomInt; y++) {
pixels[x + y * width] = (int) xTexture*100;
zBuffer[x + y * width] = 0;
}
}
}
public void renderDistanceLimiter() {
for (int i = 0; i < width * height; i++) {
int colour = pixels[i];
int brightness = (int) (renderDistance / (zBuffer[i]));
if (brightness < 0) {
brightness = 0;
}
if (brightness > 255) {
brightness = 255;
}
int r = (colour >> 16) & 0xff;
int g = (colour >> 8) & 0xff;
int b = (colour) & 0xff;
r = r * brightness / 255;
g = g * brightness / 255;
b = b * brightness / 255;
pixels[i] = r << 16 | g << 8 | b;
}
}
}

From getRGB() :
Returns an array of integer pixels in the default RGB color model
(TYPE_INT_ARGB) and default sRGB color space, from a portion of the
image data. Color conversion takes place if the default model does not
match the image ColorModel
See if using TYPE_INT_ARGB instead of TYPE_INT_RGB works.

Rotate Bitmap pixels

I'm trying to rotate a Bitmap where the pixels are stored in an Array int pixels[]. I got the following method:
public void rotate(double angle) {
double radians = Math.toRadians(angle);
double cos, sin;
cos = Math.cos(radians);
sin = Math.sin(radians);
int[] pixels2 = pixels;
for (int x = 0; x < width; x++)
for (int y = 0; y < height; y++) {
int centerx = this.width / 2, centery = this.height / 2;
int m = x - centerx;
int n = y - centery;
int j = (int) (m * cos + n * sin);
int k = (int) (n * cos - m * sin);
j += centerx;
k += centery;
if (!((j < 0) || (j > this.width - 1) || (k < 0) || (k > this.height - 1)))
try {
pixels2[(x * this.width + y)] = pixels[(k * this.width + j)];
} catch (Exception e) {
e.printStackTrace();
}
}
pixels = pixels2;
}
But it just gives me crazy results. Does anyone know where the error is?

The line
int[] pixels2 = pixels;
is supposed to copy the array, but you are just copying the reference to it. Use pixels.clone(). In fact, you just need a new, empty array, so new int[pixels.lenght] is enough. In the end you need System.arraycopy to copy the new content into the old array.
There are other problems in your code -- you are mixing up rows and columns. Some expressions are written as though the image is stored row by row, others as if column by column. If row-by-row (my assumption), then this doesn't make sense: x*width + y. It should read y*width + x -- you are skipping y rows down and then moving x columns to the right. All in all, I have this code that works OK:
import static java.lang.System.arraycopy;
public class Test
{
private final int width = 5, height = 5;
private int[] pixels = {0,0,1,0,0,
0,0,1,0,0,
0,0,1,0,0,
0,0,1,0,0,
0,0,1,0,0};
public Test rotate(double angle) {
final double radians = Math.toRadians(angle),
cos = Math.cos(radians), sin = Math.sin(radians);
final int[] pixels2 = new int[pixels.length];
for (int x = 0; x < width; x++)
for (int y = 0; y < height; y++) {
final int
centerx = this.width / 2, centery = this.height / 2,
m = x - centerx,
n = y - centery,
j = ((int) (m * cos + n * sin)) + centerx,
k = ((int) (n * cos - m * sin)) + centery;
if (j >= 0 && j < width && k >= 0 && k < this.height)
pixels2[(y * width + x)] = pixels[(k * width + j)];
}
arraycopy(pixels2, 0, pixels, 0, pixels.length);
return this;
}
public Test print() {
for (int y = 0; y < height; y++) {
for (int x = 0; x < width; x++)
System.out.print(pixels[width*y + x]);
System.out.println();
}
System.out.println();
return this;
}
public static void main(String[] args) {
new Test().print().rotate(-45).print();
}
}

public void render(float nx, float ny, float nz, float size, float rotate) {
int wid = (int) ((width - nz) * size);
int hgt = (int) ((height - nz) * size);
if (wid < 0 || hgt < 0) {
wid = 0;
hgt = 0;
}
for (int x = 0; x < wid; x++) {
for (int y = 0; y < hgt; y++) {
double simple = Math.PI;
int xp = (int) (nx +
Math.cos(rotate) * ((x / simple) - (wid / simple) / 2) + Math
.cos(rotate + Math.PI / 2)
* ((y / simple) - (hgt / simple) / 2));
int yp = (int) (ny + Math.sin(rotate)
* ((x / simple) - (wid / simple) / 2) + Math.sin(rotate
+ Math.PI / 2)
* ((y / simple) - (hgt / simple) / 2));
if (xp + width < 0 || yp + height < 0 || xp >= Main.width
|| yp >= Main.height) {
break;
}
if (xp < 0
|| yp < 0
|| pixels[(width / wid) * x + ((height / hgt) * y)
* width] == 0xFFFF00DC) {
continue;
}
Main.pixels[xp + yp * Main.width] = pixels[(width / wid) * x
+ ((height / hgt) * y) * width];
}
}
}
This is only a new to rotating for me, but the process of this is that of a normal rotation. It still needs much fixing -- it's inefficient and slow. But in a small program, this code works. I'm posting this so you can take it, and make it better. :)