We Keep Coding

Java framework to manage BLOB data outside of database

I want to store my blobs outside of the database in files, however they are just random blobs of data and aren't directly linked to a file.
So for example I have a table called Data with the following columns:
id
name
comments
...
I can't just include a column called fileLink or something like that because the blob is just raw data. I do however want to store it outside of the database. I would love to create a file called 3.dat where 3 is the id number for that row entry. The only thing with this setup is that the main folder will quickly start to have a large number of files as the id is a flat folder structure and there will be OS file issues. And no the data is not grouped or structured, it's one massive list.
Is there a Java framework or library that will allow me to store and manage the blobs so that I can just do something like MyBlobAPI.saveBlob(id, data); and then do MyBlobAPI.getBlob(id) and so on? In other words something where all the File IO is handled for me?

Simply use an appropriate database which implements blobs as you described, and use JDBC. You really are not looking for another API but a specific implementation. It's up to the DB to take care of effective storing of blobs.

I think a home rolled solution will include something like a fileLink column in your table and your api will create files on the first save and then write that file on update.
I don't know of any code base that will do this for you. There are a bunch that provide an in memory file system for java. But it's only a few lines of code to write something that writes and reads java objects to a file.
You'll have to handle any file system limitations yourself. Though I doubt you'll ever burn through the limitations of modern file systems like btrfs or zfs. FAT32 is limited to 65K files per directory. But even last generation file systems support something on the order of 4 billion files per directory.
So by all means, write a class with two functions. One to serialize an object to a file; given it a unique key as a name. And another to deserialize the object by that key. If you are using a modern file system, you'll never run out of resources.

As far as I can tell there is no framework for this. The closest I could find was Hadoop's HDFS.
That being said the advice of just putting the BLOB's into the database as per the answers below is not always advisable. Sometimes it's good and sometimes it's not, it really depends on your situation. Here are a few links to such discussions:
Storing Images in DB - Yea or Nay?
https://softwareengineering.stackexchange.com/questions/150669/is-it-a-bad-practice-to-store-large-files-10-mb-in-a-database
I did find some addition really good links but I can't remember them offhand. There was one in particular on StackOverFlow but I can't find it. If you believe you know the link please add it in the comments so that I can confirm it's the right one.

Binding multi-source data to GUI in Java

Thanks for taking time to read my question.
Here's my issue : I have different data files (.csv) that I need to basically cram into the same GUI. But there are some operations that I need to do on them, nothing really fancy though. And I figured those operations would really facilitated by the possibility of using the "Sort By" and "Group By". That's why I thought to import the .csv files as databases (they are actually databases exported into csv format).
So let's use a simple example : I used the SUM operation on a column, in addition to the Group By. And I want to display the result in, say, a JTable (or other), how should I proceed ? Keeping in mind that this operation must be done for each file, and I need to display the result from the others files in the same component.

Update objects written to a text files in java

Writing Java objects or a List into a text file is ok. But I want to know how I can update or rewrite a object which was written previously without writing objects again. For example, let s assume there is a java.util.List has a set of Objects. and then that list is written to a text file. Then later that file will be read again and get all objects from list and then change one object's value at run time by a java application. Then I don't need to write entire list back to the text file. Instead only the updated object in the list is required to be rewritten or updated in the text file without rewriting the whole list again. Any suggestion, or helpful source with sample codes please.

Take a look at RandomAccessFile. This will let you seek to the place in the file you want, and only update the part that you want to update.
Also take a look at this question on stackoverflow.

Without some fairly complex logic, you won't usually be able to update an object without rewriting the entire file. For example, if one of the objects on your list contains a string "shortstring", and you need to update it with string "muchmuchlongerstring", there will be no space in the file for the longer string without rewriting all the following content in the file.
If you want to persist large object trees to a file and still have the ability to update them, your code will be less buggy and life will be simplified by using one of the many file-based DBs out there, like:
SQLite (see Java and SQLite)
Derby
H2 (disk-based tables)

Organizing data in java (on a mac)

I'm writing a tool to analyze stock market data. For this I download data and then save all the data corresponding to a stock as a double[][] 20*100000 array in a data.bin on my hd, I know I should put it in some database but this is simply performance wise the best method.
Now here is my problem: I need to do updates and search on the data:
Updates: I have to append new data to the end of the array as time progresses.
Search: I want to iterate over different data files to find a minimum or calculate moving averages etc.
I could do both of them by reading the whole file in and update it writing or do search in a specific area... but this is somewhat overkill since I don't need the whole data.
So my question is: Is there a library (in Java) or something similar to open/read/change parts of the binary file without having to open the whole file? Or searching through the file starting at a specific point?

RandomAccessFile allows seeking into particular position in a file and updating parts of the file or adding new data to the end without rewriting everything. See the tutorial here: http://docs.oracle.com/javase/tutorial/essential/io/rafs.html

You could try looking at Random Access Files:
Tutorial: http://docs.oracle.com/javase/tutorial/essential/io/rafs.html
API: http://docs.oracle.com/javase/6/docs/api/java/io/RandomAccessFile.html
... but you will still need to figure out the exact positions you want to read in a binary file.
You might want to consider moving to a database, maybe a small embedded one like H2 (http://www.h2database.com)

How to write data to a file through java?

I want to make a GUI application that contains three functions as follows:
Add a record
Edit a record
Delete a record
A record contains two fields - Name and Profession
There are two restrictions for the application
You can't use database to store info. You have to use a flat file.
Total file should not be re-written for every add/delete operation.
So, my questions are mentioned below:
Q1. Which file format would be better? (.xml or .csv or .txt or any other)
Q2. How can we perform the add/delete operation without the whole file being re-written?

The second part of your question is answered here : Best Way to Write Bytes in the Middle of a File in Java
As for the format - I would go with something as simple as possible. You don't want to have to deal with a bunch of markup processing, as using RandomAccessFile, you will going directly to a byte position. A fixed width style format would be good, so that based on the record number, you can calculate the starting position of a record or field in the file, without having to read everything in the file. The fields would then be padded out to the fixed width with spaces or some other suitable character.

I would go with CSV, zipped. it is both readable, and editable externally.
If CSV is your choice, this can help: http://javacsv.sourceforge.net/
Did you look at this? http://sourceforge.net/projects/flatworm/
Also consider Apache Derbi and HSQLDB
Another solution is this http://www.coyotegulch.com/products/jisp/index.html
You can reinvent the wheel, but that is only required if this is an academic assigment...

Given that the whole file must not be rewritten, I would suggest using RandomAccessFile that allow you to read and write only the record you want.
For the file format, a binary file, using fixed length for the record : ex: Name on 20 characters, Profession on 30.
This will allow you to use the seek() method of RandomAccessFile to directly access your data.