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Spark 2.1.1 Exception in cloudera vm | Yarn applicarion has already ended

I have updated the spark version from 1.6 to 2.1.1 . I have updated java version and scala version . But when I start spark-shell .I get following error when starting spark-shell . Please help me with this .I am new to spark . Please post some step to correct this error . The Error is displayed when starting spark-shell.
18/10/16 11:59:37 WARN hdfs.DFSClient: DataStreamer Exception
org.apache.hadoop.ipc.RemoteException(java.io.IOException): File
/user/cloudera/.sparkStaging/application_1539716150434_0001/spark_conf.zip could only be replicated to 0 nodes instead of minReplication (=1). There are 0 datanode(s) running and no node(s) are excluded in this operation.
at org.apache.hadoop.hdfs.server.blockmanagement.BlockManager.chooseTarget4NewBlock(BlockManager.java:1720)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:3440)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.addBlock(NameNodeRpcServer.java:686)
at org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.addBlock(AuthorizationProviderProxyClientProtocol.java:217)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.addBlock(ClientNamenodeProtocolServerSideTranslatorPB.java:506)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2226)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2222)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1917)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2220)
at org.apache.hadoop.ipc.Client.call(Client.java:1469)
at org.apache.hadoop.ipc.Client.call(Client.java:1400)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
at com.sun.proxy.$Proxy13.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.addBlock(ClientNamenodeProtocolTranslatorPB.java:399)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy14.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.locateFollowingBlock(DFSOutputStream.java:1532)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.nextBlockOutputStream(DFSOutputStream.java:1349)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:588)
18/10/16 11:59:37 ERROR spark.SparkContext: Error initializing SparkContext.
org.apache.hadoop.ipc.RemoteException(java.io.IOException): File /user/cloudera/.sparkStaging/application_1539716150434_0001/spark_conf.zip could only be replicated to 0 nodes instead of minReplication (=1). There are 0 datanode(s) running and no node(s) are excluded in this operation.
at org.apache.hadoop.hdfs.server.blockmanagement.BlockManager.chooseTarget4NewBlock(BlockManager.java:1720)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:3440)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.addBlock(NameNodeRpcServer.java:686)
at org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.addBlock(AuthorizationProviderProxyClientProtocol.java:217)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.addBlock(ClientNamenodeProtocolServerSideTranslatorPB.java:506)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2226)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2222)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1917)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2220)
at org.apache.hadoop.ipc.Client.call(Client.java:1469)
at org.apache.hadoop.ipc.Client.call(Client.java:1400)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
at com.sun.proxy.$Proxy13.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.addBlock(ClientNamenodeProtocolTranslatorPB.java:399)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy14.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.locateFollowingBlock(DFSOutputStream.java:1532)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.nextBlockOutputStream(DFSOutputStream.java:1349)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:588)
18/10/16 11:59:37 WARN cluster.YarnSchedulerBackend$YarnSchedulerEndpoint: Attempted to request executors before the AM has registered!
18/10/16 11:59:37 ERROR util.Utils: Uncaught exception in thread main
java.lang.NullPointerException
at org.apache.spark.network.shuffle.ExternalShuffleClient.close(ExternalShuffleClient.java:152)
at org.apache.spark.storage.BlockManager.stop(BlockManager.scala:1407)
at org.apache.spark.SparkEnv.stop(SparkEnv.scala:89)
at org.apache.spark.SparkContext$$anonfun$stop$11.apply$mcV$sp(SparkContext.scala:1849)
at org.apache.spark.util.Utils$.tryLogNonFatalError(Utils.scala:1283)
at org.apache.spark.SparkContext.stop(SparkContext.scala:1848)
at org.apache.spark.SparkContext.(SparkContext.scala:587)
at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2320)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$6.apply(SparkSession.scala:868)
at org.apache.spark.sql.SparkSession$Builder$$anonfun$6.apply(SparkSession.scala:860)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:860)
at org.apache.spark.repl.Main$.createSparkSession(Main.scala:96)
at $line3.$read$$iw$$iw.(:15)
at $line3.$read$$iw.(:42)
at $line3.$read.(:44)
at $line3.$read$.(:48)
at $line3.$read$.()
at $line3.$eval$.$print$lzycompute(:7)
at $line3.$eval$.$print(:6)
at $line3.$eval.$print()
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:786)
at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1047)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:638)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:637)
at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31)
at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19)
at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:637)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:569)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:565)
at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:807)
at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:681)
at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:395)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply$mcV$sp(SparkILoop.scala:38)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply(SparkILoop.scala:37)
at org.apache.spark.repl.SparkILoop$$anonfun$initializeSpark$1.apply(SparkILoop.scala:37)
at scala.tools.nsc.interpreter.IMain.beQuietDuring(IMain.scala:214)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:37)
at org.apache.spark.repl.SparkILoop.loadFiles(SparkILoop.scala:105)
at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920)
at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:909)
at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:909)
at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97)
at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:909)
at org.apache.spark.repl.Main$.doMain(Main.scala:69)
at org.apache.spark.repl.Main$.main(Main.scala:52)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:743)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:187)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:212)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:126)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
org.apache.hadoop.ipc.RemoteException: File /user/cloudera/.sparkStaging/application_1539716150434_0001/spark_conf.zip could only be replicated to 0 nodes instead of minReplication (=1). There are 0 datanode(s) running and no node(s) are excluded in this operation.
at org.apache.hadoop.hdfs.server.blockmanagement.BlockManager.chooseTarget4NewBlock(BlockManager.java:1720)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:3440)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.addBlock(NameNodeRpcServer.java:686)
at org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.addBlock(AuthorizationProviderProxyClientProtocol.java:217)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.addBlock(ClientNamenodeProtocolServerSideTranslatorPB.java:506)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2226)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2222)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1917)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2220)
at org.apache.hadoop.ipc.Client.call(Client.java:1469)
at org.apache.hadoop.ipc.Client.call(Client.java:1400)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
at com.sun.proxy.$Proxy13.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.addBlock(ClientNamenodeProtocolTranslatorPB.java:399)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy14.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.locateFollowingBlock(DFSOutputStream.java:1532)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.nextBlockOutputStream(DFSOutputStream.java:1349)
at org.apache.hadoop.hdfs.DFSOutputStream$DataStreamer.run(DFSOutputStream.java:588)
:14: error: not found: value spark
import spark.implicits._
^
:14: error: not found: value spark
import spark.sql
^

Gremlin Console can't initialize neo4j2 embedded database

I want to use the Gremlin console for some Gremlin queries on an embedded neo4j2 database. Gremlin via Rexster is not a problem.
When I try to load the graph I get the following error message:
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4405a711' was successfully initialized, but failed to start. Please see attached cause exception
with the following stack trace:
at com.tinkerpop.blueprints.impls.neo4j.Neo4jGraph.<init>(Neo4jGraph.java:166)
at com.tinkerpop.blueprints.impls.neo4j.Neo4jGraph.<init>(Neo4jGraph.java:136)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:77)
at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrapNoCoerce.callConstructor(ConstructorSite.java:102)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:54)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:182)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:190)
at groovysh_evaluate.run(groovysh_evaluate:51)
at groovysh_evaluate$run.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:112)
at org.codehaus.groovy.tools.shell.Interpreter.evaluate(Interpreter.groovy:67)
at org.codehaus.groovy.tools.shell.Interpreter$evaluate.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.Groovysh.execute(Groovysh.groovy:152)
at org.codehaus.groovy.tools.shell.Shell.leftShift(Shell.groovy:114)
at org.codehaus.groovy.tools.shell.Shell$leftShift$0.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.ShellRunner.work(ShellRunner.groovy:88)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$work(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.work(InteractiveShellRunner.groovy:100)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSiteNoUnwrapNoCoerce.invoke(PogoMetaMethodSite.java:272)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:52)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:46)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:133)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
at org.codehaus.groovy.tools.shell.ShellRunner.run(ShellRunner.groovy:57)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$run(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.run(InteractiveShellRunner.groovy:66)
at com.tinkerpop.gremlin.groovy.console.Console.<init>(Console.java:60)
at com.tinkerpop.gremlin.groovy.console.Console.main(Console.java:102)
Caused by: java.lang.RuntimeException: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#39ba25e4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:287)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:106)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:63)
at com.tinkerpop.blueprints.impls.neo4j.Neo4jGraph.<init>(Neo4jGraph.java:156)
... 61 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#39ba25e4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:265)
... 65 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#63cd462c' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:128)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 67 more
Caused by: org.neo4j.kernel.impl.storemigration.UpgradeNotAllowedByConfigurationException: Failed to start Neo4j with an older data store version. To enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true"
at org.neo4j.kernel.impl.storemigration.ConfigMapUpgradeConfiguration.checkConfigurationAllowsAutomaticUpgrade(ConfigMapUpgradeConfiguration.java:39)
at org.neo4j.kernel.impl.storemigration.StoreUpgrader.attemptUpgrade(StoreUpgrader.java:66)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.tryToUpgradeStores(StoreFactory.java:114)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.newNeoStore(StoreFactory.java:97)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:240)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 70 more
Can someone help me get the Gremlin console working with a neo4j2 graph database?
Thanks in advance

As cybersam already mentioned the relevant part of the stacktrace is:
org.neo4j.kernel.impl.storemigration.UpgradeNotAllowedByConfigurationException: Failed to start Neo4j with an older data store version. To enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true"
If you think your datastore is on same version as the libraries you're using doublecheck the classpath for duplicates. If you have two different versions it's generally non-deterministic which one is being used.

Titan with hbase on windows 7 configuarations

I am struggling to set up titan with Hbase .Below are the stteps I followed,
Downloaed titan-hbase
downloaded cygwin
Installed Hbase ( referred this http://hbase.apache.org/cygwin.html)
Hbase in running in cygwin .
5.Titan is running on my windows and basic gremlin console is coming up.
Now I want to load Hbase as storage in titan .
I am not understanding how to configure in titan so that it will map to hbase (which running in cygwin shell (command prompt).
I am trying something like this on my titan console
gremlin> TitanGraph g = TitanFactory.open('conf\titan-hbase-es.properties');
I am getting below error
Could not instantiate implementation: com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager
Display stack trace? [yN]
java.lang.IllegalArgumentException: Could not instantiate implementation:
com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager
at com.thinkaurelius.titan.diskstorage.Backend.instantiate(Backend.java:355)
at com.thinkaurelius.titan.diskstorage.Backend.getImplementationClass(Backend.java:367)
at com.thinkaurelius.titan.diskstorage.Backend.getStorageManager(Backend.java:311)
at com.thinkaurelius.titan.diskstorage.Backend.(Backend.java:121)
at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1173)
at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.(StandardTitanGraph.java:75)
at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:40)
at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:29)
at com.thinkaurelius.titan.core.TitanFactory$open.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at groovysh_evaluate.run(groovysh_evaluate:56)
at groovysh_evaluate$run.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:112)
at org.codehaus.groovy.tools.shell.Interpreter.evaluate(Interpreter.groovy:67)
at org.codehaus.groovy.tools.shell.Interpreter$evaluate.call(Unknown
Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.Groovysh.execute(Groovysh.groovy:152)
at org.codehaus.groovy.tools.shell.Shell.leftShift(Shell.groovy:114)
at org.codehaus.groovy.tools.shell.Shell$leftShift$0.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.tools.shell.ShellRunner.work(ShellRunner.groovy:88)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$work(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.work(InteractiveShellRunner.groovy:100)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSiteNoUnwrapNoCoerce.invoke(PogoMetaMethodSite.java:272)
at org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:52)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:46)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:133)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
at org.codehaus.groovy.tools.shell.ShellRunner.run(ShellRunner.groovy:57)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$run(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.run(InteractiveShellRunner.groovy:66)
at com.thinkaurelius.titan.tinkerpop.gremlin.Console.(Console.java:57)
at com.thinkaurelius.titan.tinkerpop.gremlin.Console.(Console.java:70)
at com.thinkaurelius.titan.tinkerpop.gremlin.Console.main(Console.java:96)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.thinkaurelius.titan.diskstorage.Backend.instantiate(Backend.java:344)
... 63 more Caused by: com.thinkaurelius.titan.diskstorage.PermanentStorageException: Failed
to create directory D:\GraphDBTitan\titan-all-0.4.4\bin\conf
itan-hbase-es.properties for local storage.
at com.thinkaurelius.titan.diskstorage.util.DirectoryUtil.getOrCreateDataDirectory(DirectoryUtil.java:24)
at com.thinkaurelius.titan.diskstorage.common.LocalStoreManager.(LocalStoreManager.java:29)
at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.(BerkeleyJEStoreManager.java:36)
... 68 more
Please someone help me to fix this .

Like remis said in the comments, installing on a Linux machine would reduce the compatibility issues. If you decide to give it a go this article contains the steps to get you started with Titan on HBase: http://blog.trackerbird.com/content/setting-up-titan-1-0-apache-hbase/.

I found the main issue under the cygwin is with the $(pwd) expression, change it to $(cygpath -aw $(pwd)) please.

Running Hadoop Examples Jar

Please help. I searched online and couldn't find anything. Most of the similar questions are unanswered or unhelpful.
Hi I am trying to run Hadoop Examples of Pi. My setup is all done and successful. I ran bim/hadoop dfs -ls and I get no error.
But this:
Sanjanas-MacBook-Pro:hadoop sanjanaagarwal$ /usr/local/Hadoop/bin/hadoop jar $HADOOP_HOME/hadoop-examples-*.jar pi 10 100
Number of Maps = 10
Samples per Map = 100
13/11/21 20:57:47 WARN hdfs.DFSClient: DataStreamer Exception: org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/sanjanaagarwal/PiEstimator_TMP_3_141592654/in/part0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1591)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:771)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:557)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1439)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1435)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:394)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1278)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1433)
at org.apache.hadoop.ipc.Client.call(Client.java:1150)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:226)
at com.sun.proxy.$Proxy0.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
at com.sun.proxy.$Proxy0.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3719)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3586)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2400(DFSClient.java:2792)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:2987)
13/11/21 20:57:47 WARN hdfs.DFSClient: Error Recovery for block null bad datanode[0] nodes == null
13/11/21 20:57:47 WARN hdfs.DFSClient: Could not get block locations. Source file "/user/sanjanaagarwal/PiEstimator_TMP_3_141592654/in/part0" - Aborting...
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/sanjanaagarwal/PiEstimator_TMP_3_141592654/in/part0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1591)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:771)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:557)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1439)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1435)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:394)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1278)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1433)
at org.apache.hadoop.ipc.Client.call(Client.java:1150)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:226)
at com.sun.proxy.$Proxy0.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
at com.sun.proxy.$Proxy0.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3719)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3586)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2400(DFSClient.java:2792)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:2987)
13/11/21 20:57:47 ERROR hdfs.DFSClient: Exception closing file /user/sanjanaagarwal/PiEstimator_TMP_3_141592654/in/part0 : org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/sanjanaagarwal/PiEstimator_TMP_3_141592654/in/part0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1591)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:771)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:557)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1439)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1435)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:394)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1278)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1433)
org.apache.hadoop.ipc.RemoteException: java.io.IOException: File /user/sanjanaagarwal/PiEstimator_TMP_3_141592654/in/part0 could only be replicated to 0 nodes, instead of 1
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(FSNamesystem.java:1591)
at org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:771)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:557)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1439)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1435)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:394)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1278)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1433)
at org.apache.hadoop.ipc.Client.call(Client.java:1150)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:226)
at com.sun.proxy.$Proxy0.addBlock(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
at com.sun.proxy.$Proxy0.addBlock(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DFSClient.java:3719)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(DFSClient.java:3586)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2400(DFSClient.java:2792)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSClient.java:2987)
My hadoop-env.sh is all set. Still don't know whats the problem here.. Please mention the command if there's something to check since I am pretty new with linux. Thanks

I think DataNode of your cluster is not running. Check using jps command.

Couldn't solve the error so found a workaround where I got a VM from cloud era on virtualBox and ran cloudera on it.

Hadoop word count example without root permissions

I am trying to run this hadoop word count example on a Linux machine without root permissions. I keep getting this error all the time, though.
13/08/27 16:00:08 ERROR security.UserGroupInformation: PriviledgedActionException as:priyankara cause:org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.mapred.JobTrackerNotYetInitializedException: JobTracker is not yet RUNNING
at org.apache.hadoop.mapred.JobTracker.checkJobTrackerState(JobTracker.java:5199)
at org.apache.hadoop.mapred.JobTracker.getNewJobId(JobTracker.java:3543)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.mapred.JobTrackerNotYetInitializedException: JobTracker is not yet RUNNING
at org.apache.hadoop.mapred.JobTracker.checkJobTrackerState(JobTracker.java:5199)
at org.apache.hadoop.mapred.JobTracker.getNewJobId(JobTracker.java:3543)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:587)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1432)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1428)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1426)
at org.apache.hadoop.ipc.Client.call(Client.java:1113)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:229)
at org.apache.hadoop.mapred.$Proxy2.getNewJobId(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:85)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:62)
at org.apache.hadoop.mapred.$Proxy2.getNewJobId(Unknown Source)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:944)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:936)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:396)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1190)
at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:936)
at org.apache.hadoop.mapreduce.Job.submit(Job.java:550)
at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:580)
at org.apache.hadoop.examples.WordCount.main(WordCount.java:82)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.util.ProgramDriver$ProgramDescription.invoke(ProgramDriver.java:68)
at org.apache.hadoop.util.ProgramDriver.driver(ProgramDriver.java:139)
at org.apache.hadoop.examples.ExampleDriver.main(ExampleDriver.java:64)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.hadoop.util.RunJar.main(RunJar.java:160)
What is happening? How can I fix this?
I think the problem is I don't have root permission on that machine. Is there a way to run this example without root permission or not?

The problem was solved by editing the etc/hosts file.
We have to put our Ip address and host name to /etc/hosts file.
example ,
If your Ip is 192.255.50.1 then your user name is 'user' you have to put them both on your hosts file as ,
192.255.50.1 user

Please check your hostname, is it "localhost" or different name?
You can try to change the host name to be "localhost", than re-start the Hadoop. For instance,
$ hostname localhost
$ $HADOOP_HOME/bin/stop-all.sh
$ $HADOOP_HOME/bin/start-all.sh
This works for my case. For your information, good luck!

I was trying to use minicluster on Windows ,
this suggestion of 192.255.50.1 user fixed my issue , I put 127.0.0.1 myloginname(user). it fixed my issue of Datanode denied communication with namenode:
thanks DilanG