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Maven jandex plugin does not generate index for local custom maven repositories (sometimes)

I have a multi module maven project wie quarkus modules and some custom libraries which are local maven repositories (so they can be used by the other maven projects/modules). However, so that local maven repositories are recognizable und usable by your other local maven projects, you have to manually index them for some reason. I.e. add a config like this for quarkus index to the application.properties of the project including the local maven repo dependency:
quarkus.index-dependency.<index-name>.group-id = <group-id-of-local-maven-repo>
quarkus.index-dependency.<index-name>.artifact-id = <artifact-id-of-local-maven-repo>
The problem is, this causes issues for me becausse if you have 3 layers of project dependencies, say:
Project A (custom local maven repo library)
Project B (custom local maven repo library, includes Project A dependency)
application.properties (indexing Project A library dependency)
Project C (Local maven project for an end product, includes Project B
library dependency - and through it indirectly Project A).
application.properties (indexing Project B library dependency and config for datasources or other app related things)
Then when you generate an uber-jar (fat jar) of Project C for deployment, it for some reason uses application.properties of Project B in the packaged jar, instead of from the project which im building (Project C). Thus, the app is missing key configs and does not work. Maven seems to use an inverse priority here, which i dont know if thats a bug or not. When i asked about this, i was simply told that:
"My dependencies should not have application.properties".
I tried to find a way to prevent manual indexing via application.properties and found the maven jandex plugin - which is supposed to generate an index. The next problem is, this seems to only work in some projects but not in others in the dependency hierarchy, resulting in the same situation as before, and i don't understand why. This is the pom.xml config for the plugin i have included in all 3 projects (the entire pom.xml for all is too long, so let me know if you need more info):
<properties>
...
<jandex.skip>false</jandex.skip>
...
</properties>
...
<build>
...
<plugin>
<groupId>io.smallrye</groupId>
<artifactId>jandex-maven-plugin</artifactId>
<version>3.0.5</version>
<inherited>true</inherited>
<executions>
<execution>
<id>make-index</id>
<goals>
<goal>jandex</goal>
</goals>
</execution>
</executions>
<configuration>
<skip>${jandex.skip}</skip>
</configuration>
</plugin>
...
The odd thing is, this works to the extend that i no longer have to index Project B library dependency in Project C application.properties, but Project B library dependency still has to manually index Project A library dependency - thus rendering the entire exercise futile. Project C having an application.properties was never the issue, and is obviously needed. Project B still requires a properties file to point to Project A now, how do i solve this?
I have a parent module POM in the root folder containing all these projects, over which this maven jandex dependency is distributed to all modules, so it looks like this:
Maven parent module (contains all dependencies and versions used by all project sub modules)
Project A (custom local maven library repo), own pom.xml with inheritance from parent module
Project B (custom local maven library repo, includes Project A library), own pom.xml with inheritance from parent module
application.properties - Indexes Project A dependency manually, this is the problematic one which needs to go!
Project C (Local maven project for REST API etc., includes Project B library), own pom.xml with inheritance from parent module
pom.xml (parent module POM, containing maven jandex dependepency among others)
Edit: One of the projects, "entity", where all the database access objects are stored, does not run the jandex plugin during mvn clean install. This is the POM of the project:
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.compamny.project</groupId>
<artifactId>entity</artifactId>
<version>1.0-SNAPSHOT</version>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<maven.compiler.source>17</maven.compiler.source>
<maven.compiler.target>17</maven.compiler.target>
</properties>
<dependencies>
<dependency>
<groupId>io.quarkus</groupId>
<artifactId>quarkus-hibernate-orm</artifactId>
<version>2.16.1.Final</version>
</dependency>
<dependency>
<groupId>io.quarkus</groupId>
<artifactId>quarkus-hibernate-validator</artifactId>
<version>2.16.1.Final</version>
</dependency>
<dependency>
<groupId>io.quarkus</groupId>
<artifactId>quarkus-resteasy-reactive-jackson</artifactId>
<version>2.16.1.Final</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-jdk8</artifactId>
<version>2.13.3</version>
</dependency>
<!-- https://mvnrepository.com/artifact/io.smallrye/jandex-maven-plugin -->
<dependency>
<groupId>io.smallrye</groupId>
<artifactId>jandex-maven-plugin</artifactId>
<version>3.0.0</version>
</dependency>
</dependencies>
<build>
<pluginManagement>
<plugins>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>3.1.0</version>
</plugin>
<plugin>
<artifactId>maven-resources-plugin</artifactId>
<version>3.0.2</version>
</plugin>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.0</version>
</plugin>
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.1</version>
</plugin>
<plugin>
<artifactId>maven-jar-plugin</artifactId>
<version>3.0.2</version>
</plugin>
<plugin>
<artifactId>maven-install-plugin</artifactId>
<version>2.5.2</version>
</plugin>
<plugin>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.8.2</version>
</plugin>
<plugin>
<artifactId>maven-site-plugin</artifactId>
<version>3.7.1</version>
</plugin>
<plugin>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>io.smallrye</groupId>
<artifactId>jandex-maven-plugin</artifactId>
<version>3.0.0</version>
<inherited>true</inherited>
<executions>
<execution>
<id>make-index</id>
<goals>
<goal>jandex</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
</build>
</project>
When i force the execution of the jandex goal with mvn io.smallrye:jandex-maven-plugin:3.0.0:jandex it creates an META-INF/jandex.jdx file, but it does not produce one when i run mvn clean install. This is not a solution since i need to build the project, run the jandex plugin and install it into my local repositories separately. Also, notice that im using the "io.smallrye" version of the jandex plugin since the "org.jboss" version seems to not work at all.

I figured it out. The jandex plugin was set in the <pluginManagement> section of the POM configuration, which made it not run on mvn clean install. I had to move it to the plugins section so it gets executed. Thanks #Ladicek for making me look closer and keep trying!

Java: Can't find symbol: class name, when the class name in one of two packages with the same name [duplicate]

I use maven to build a multi module project. My module 2 depends on Module 1 src at compile scope and module 1 tests in test scope.
Module 2 -
<dependency>
<groupId>blah</groupId>
<artifactId>MODULE1</artifactId>
<version>blah</version>
<classifier>tests</classifier>
<scope>test</scope>
</dependency>
This works fine. Say my module 3 depends on Module1 src and tests at compile time.
Module 3 -
<dependency>
<groupId>blah</groupId>
<artifactId>MODULE1</artifactId>
<version>blah</version>
<classifier>tests</classifier>
<scope>compile</scope>
</dependency>
When I run mvn clean install, my build runs till module 3, fails at module 3 as it couldn't resolve the module 1 test dependency. Then I do a mvn install on module 3 alone, go back and run mvn install on my parent pom to make it build. How can I fix this?

I have a doubt about what you are trying to do but but I'll assume you want to reuse the tests that you have created for a project (module1) in another. As explained in the note at the bottom of the Guide to using attached tests:
Note that previous editions of this guide suggested to use <classifier>tests</classifier> instead of <type>test-jar</type>. While this currently works for some cases, it does not properly work during a reactor build of the test JAR module and any consumer if a lifecycle phase prior to install is invoked. In such a scenario, Maven will not resolve the test JAR from the output of the reactor build but from the local/remote repository. Apparently, the JAR from the repositories could be outdated or completely missing, causing a build failure (cf. MNG-2045).
So, first, to package up compiled tests in a JAR and deploy them for general reuse, configure the maven-jar-plugin as follows:
<project>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.2</version>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>
Then, install/deploy the test JAR artifact as usual (using mvn install or mvn deploy).
Finally, to use the test JAR, you should specify a dependency with a specified type of test-jar:
<project>
...
<dependencies>
<dependency>
<groupId>com.myco.app</groupId>
<artifactId>foo</artifactId>
<version>1.0-SNAPSHOT</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
</dependencies>
...
</project>

Regarding to my comment to Pascals question i think i have found a stuitable answer :
<plugins>
<plugin>
<artifactId>maven-jar-plugin</artifactId>
<version>2.2</version>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
<phase>test-compile</phase>
</execution>
</executions>
<configuration>
<outputDirectory>${basedir}\target</outputDirectory>
</configuration>
</plugin>
</plugins>
The main difference here as you see here is the <phase> tag.
I will create the test-jar and it will be available in the compile phase of the tests and not only after the package phase.
Works for me.

Maven project doesn't recognize any classes from included sibling dependency [duplicate]

I am writing a project for acceptance testing and for various reasons this is dependent on another project which is packaged as a WAR. I have managed to unpack the WAR using the maven-dependency-plugin, but I cannot get my project to include the unpacked WEB-INF/lib/*.jar and WEB-INF/classes/* to be included on the classpath so the build fails. Is there a way to include these files into the classpath, or is there a better way of depending on a WAR?
Many thanks.

There's another option since maven-war-plugin 2.1-alpha-2. In your WAR project:
<plugin>
<artifactId>maven-war-plugin</artifactId>
<version>2.1.1</version>
<configuration>
<attachClasses>true</attachClasses>
</configuration>
</plugin>
This creates a classes artifact which you can use in the acceptance tests project with:
<dependency>
<groupId>your-group-id</groupId>
<artifactId>your-artifact-id</artifactId>
<version>your-version</version>
<classifier>classes</classifier>
</dependency>

Indeed, by design, Maven doesn't resolve transitive dependencies of a war declared as dependency of a project. There is actually an issue about that, MNG-1991, but it won't be solved in Maven 2.x and I'm not sure that I don't know if overlays allow to workaround this issue. My understanding of the suggested solution is to duplicate the dependencies, for example in a project of type pom.
(EDIT: After some more digging, I found something interesting in this thread that I'm quoting below:
I have been helping out with the development of the AppFuse project over
the last month where we make heavy use of the war overlay feature in the
Maven war plugin. It is a really nifty feature!
To get max power with war overlays I have developed the Warpath plugin
that allows projects to use war artifacts as fully fledged dependencies.
In brief:
1) The contents of the /WEB-INF/classes directory in the war dependency
artifacts can be included in the project's classpath for normal compile,
etc tasks.
2) Transitive dependencies from the war dependency artifacts become
available for use by other plugins, e.g. compile and ear - so no more
having to include all the dependencies when creating skinny wars!
The plugin has now been actively used in the AppFuse project for the
last few months, and I feel it is at a point where it is both usable and
stable.
Would the war plugin team be interested in including the warpath
functionality inside the war plugin? It would seem to be the most
natural place to host it.
So, I don't have any experience with it, but the maven warpath plugin actually looks nice and simple and is available in the central repo. To use it,include the following plugin configuration element in your pom.xml file:
[...]
<build>
<plugins>
<plugin>
<groupId>org.appfuse</groupId>
<artifactId>maven-warpath-plugin</artifactId>
<version>1.0-SNAPSHOT</version>
<extensions>true</extensions>
<executions>
<execution>
<goals>
<goal>add-classes</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
[...]
And add the war dependencies you want included in the classpath as warpath type dependencies:
[...]
<dependencies>
<dependency>
<groupId>org.appfuse</groupId>
<artifactId>appfuse-web</artifactId>
<version>2.0</version>
<type>war</type>
</dependency>
<dependency>
<groupId>org.appfuse</groupId>
<artifactId>appfuse-web</artifactId>
<version>2.0</version>
<type>warpath</type>
</dependency>
</dependencies>
[...]
Both the war and warpath dependency types are needed: the war type is used by the Maven war plugin to do the war overlay, the warpath type is used by the Warpath plugin to determine the correct list of artifacts for inclusion in the project classpath.
I'd give it a try.)

Use overlays. First, your test project need to have also packaging war.
Declare dependency of war project you want to test:
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>your-project-arftifactId</artifactId>
<version>${project.version}</version>
<type>war</type>
<scope>test</scope>
</dependency>
then configure maven-war-plugin overlay:
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<configuration>
<webResources>
<resource>
<directory>${basedir}/src/main/webresources</directory>
<filtering>true</filtering>
</resource>
</webResources>
<overlays>
<overlay/>
<overlay>
<groupId>your.group</groupId>
<artifactId>your-project-artifactId</artifactId>
</overlay>
</overlays>
</configuration>
</plugin>
In the above example in test project I overwrite webresources configuration files (like conxtext etc.).
EDIT: This solution wasn't tested with Maven 3.

Good point, Justin. That got me actually solving my problem, namely: including a war into an assembly AND including all its transitive dependencies.
I could not duplicate the war-dependency as 'jar' as you suggested since the assembly plugin would not find a jar referenced by that groupId/artefactId, but
duplicating the war-dependency as type pom
works!
The war and its transitive dependencies are not included in the assembly.
To exclude the (now also appearing) pom file I had to add an exclude element like this:
<excludes>
<exclude>*:pom</exclude>
</excludes>
into my assembly.xml file.
I think this could also be a workaround for the original question of this thread.

If you list the dependency on the war project as a jar dependency it seems to pickup the required jars/resources. I'm using Maven 2.2 + m2eclipse.

Maven3- How to tell maven to use latest versions using verions-maven-plugin?

I am using Maven 3.2.5. I have a multi module project with parent P and sub-modules A(jar), B(war), C(EAR). I want to always use the latest version of dependency as we do nightly builds to QA environments. We could achieve this in Maven2 by using 'LATEST' in place of version number. But looks like this feature is disabled in MAVEN3. Now I am trying to make use of "use-latest-versions" goal in versions-maven-plugin.
I am trying to run this plugin on modules B and C so that module B will use latest artifact from module A and module C will use latest artifact from module B to build final EAR.
**My parent POM**
<modelVersion>4.0.0</modelVersion>
<groupId>GGGGGGG</groupId>
<artifactId>JARJARAJR</artifactId>
<version>19.1-SNAPSHOT</version>
<packaging>pom</packaging>
<name>JARJARAJR</name>
//Modules of this project
<modules>
<module>../../../Module A</module>
<module>../../../Module Bs</module>
<module>../../../Module C</module>
</modules>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.1</version>
<executions>
<execution>
<id>update-dependency-versions</id>
//Asking maven to run this goal in 'pre-clean' phase
<phase>pre-clean</phase>
<goals>
<goal>use-latest-versions</goal>
</goals>
</execution>
</executions>
<configuration>
<allowSnapshots>true</allowSnapshots>
<excludeReactor>false</excludeReactor>
</configuration>
</plugin>
</plugins>
</pluginManagement>
The command I am using to run parent POM is : **mvn -U clean install -P devb - Dmaven.test.skip=true**
I am trying to invoke "use-latest-versions" goal in the "pre-clean" phase(I tried validate and initialize phases too).Bu after module A is built, maven tried to resolve the old version of Module B without running goal "use-latest-versions" for 'versions-maven-plugin".
In which phase should I run "use-latest-versions" goal so that maven updates the dependency version in Module B before trying to build it?

This is how I achieved what I am looking for(Always take latest versions of dependencies):
I have setup a pre-step to "invoke top level maven targets" in jenkins and triggers the command:
mvn versions:use-latest-versions -DallowSnapshots=true -DexcludeReactor=false
on the parent pom
This will update the dependency versions in the parent POM and all its child POM's.
Thank you khmarbaise for trying to help me. I appreciate your time.

Publish test utils from maven project

I created a library in maven that can be extended by implementing some interfaces. To test the default implementation I have written some hamcrest matchers that currently live in src/test/java.
However, I think they might be useful for users of the library if they want to test their customization.
So how can I make them available? Moving them to src/main would require to make hamcrest a runtime dependency and I don't want that.

There is a way to create a test jar and install it into the repository using the command 'mvn jar:test-jar'. This jar can then be referenced by other projects using the test-jar modifier in the dependency block.
If you want to have this jar built and installed as part of your your normal 'mvn install' build add the following plugin config to your pom:
From http://maven.apache.org/guides/mini/guide-attached-tests.html
<project>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.2</version>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>
Then other projects can reference the test jar as follows:
<dependency>
<groupId>com.myco.app</groupId>
<artifactId>foo</artifactId>
<version>1.0-SNAPSHOT</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>

As you said, move it to src/main in a new project. Let that project only be used in a test dependency and you don't pollute your module's classpath.

It sounds like you need to move them to their own project and release it. From there you can determine in the original project what scope you'd like.