Good practice when manipulating data in java [closed] - java

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Is it bad practice to directly manipulate data like:
Sorter.mergeSort(testData); //(testData is now sorted)
Or should I create A copy of the data and then manipulate and return that like:
sortedData = Sorter.mergeSort(testData); // (sortedData is now sorted and testData remains unsorted)?
I have several sorting methods and I want to be consistent in the way they manipulate data. With my insertionSort method I can directly work on the unsorted data. However, if I want to leave the unsorted data untouched then I would have to create a copy of the unsorted data in the insertionSort method and manipulate and return that (which seems rather unnecessary). On the other hand in my mergeSort method I need to create a copy of the unsorted data one way or another so I ended up doing something that also seems rather unnecessary as a work around to returning a new sortedList:
List <Comparable> sorted = mergeSortHelper(target);
target.clear();
target.addAll(sorted);`
Please let me know which is the better practice, thanks!

It depends whether you're optimising for performance or functional purity. Generally in Java functional purity is not emphasised, for example Collections.Sort sorts the list you give it (even though it's implemented by making an array copy first).
I would optimise for performance here, as that seems more like typical Java, and anyone who wants to can always copy the collection first, like Sorter.mergeSort(new ArrayList(testData));

The best practice is to be consistent.
Personally I prefer my methods to not modify the input parameters since it might not be appropriate in all situations (you're pushing the responsibility onto the end user to make a copy if they need to preserve the original ordering).
That being said, there are clear performance benefits of modifying the input (especially for large lists). So this might be appropriate for your application.
As long as the functionality is clear to the end user you're covered either way!

In Java I usually provide both options (when writing re-usable utility methods, anyway):
/** Return a sorted copy of the data from col. */
public List<T> mergeSort(Collection<T extends Comparable<T>> col);
/** Sort the data in col in place. */
public void mergeSortIn(List<T extends Comparable<T>> col);
I'm making some assumptions re the signatures and types here. That said, the Java norm is - or at least, has been* - generally to mutate state in place. This is often a dangerous thing, especially across API boundaries - e.g. changing a collection passed to your library by its 'client' code. Minimizing the overall state-space and mutable state in particular is often the sign of a well designed application/library.
It sounds like you want to re-use the same test data. To do that I would write a method that builds the test data and returns it. That way, if I need the same test data again in a different test (i.e. to test your mergeSort() / insertionSort() implementations on the same data), you just build and return it again. I commonly do exactly this in writing unit tests (in JUnit, for example).
Either way, if your code is a library class/method for other people to use you should document its behaviour clearly.
Aside: in 'real' code there shouldn't really be any reason to specify that merge sort is the implementation used. The caller should care what it does, not how it does it - so the name wouldn't usually be mergeSort(), insertionSort(), etc.
(*) In some of the newer JVM languages there has been a conscious movement away from mutable data. Clojure has NO mutable state at all as it is a pure functional programming language (at least in normal, single-threaded application development). Scala provides a parallel set of collection libraries that do not mutate the state of collections. This has major advantages in multi-threaded, multi-processor applications. This is not as time/space expensive as might be naively expected, due to the clever algorithms the collections use.

In your particular case, modifying the "actual" data is more efficient. You are sorting data, it is observed that its more efficient to work on sorted data rather than unsorted data. So, I don't see why you should keep the unsorted data. check out Why is it faster to process a sorted array than an unsorted array?

Mutable object should be manipulated in the functions. Like Arrays#sort
But immutable objects (like String), can only return the "new" objects. Like String#replace

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What are the things to be kept in mind when aiming for a good class design? [closed]

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Yesterday I have attended interview in one Leading IT Service company. Technical interview was good, no issues, then I have moved to another set of round about Management, Design and Process. I have answered everything except the below question.
Question asked by interviewer:
Let say you are developing a class, which I am going to consume in my
class by extending that, what are the key points you keep in
mind? Ex, Class A, which has a method called "method A" returns a Collection,
let say "list". What are the precautions you will take?
My Answer: The following points I will consider, such as:
Class and method need to be public
Method 1 returns a list, then this needs to be generics. So we can avoid class cast exception
If this class will be accessed in a multi-threaded environment, the method needs to be synchronized.
But the interviewer wasn't convinced by my points. He was expecting a different answer from me but I am not able to get his thought process, what he was excepting.
So please provide your suggestions.
I would want you holding to design principles of Single Reaponsibility, Open/Close, and Dependency Injection. Keep it stateless, simple, and testable. Make sure it can be extended without needing to change.
But then, I wasn't interviewing you.
A few more points which haven't been mentioned yet would be:
Decent documentation for your class so that one doesn't have to dig too deep into your code to understand what functionality you offer and what are the gotchas.
Try extending your own class before handing it out to someone else. This way, you personally can feel the pain if you class is not well designed and thereby can improve it.
If you are returning a list or any collection, one important question you need to ask is, "can the caller modify the returned collection"? Or "is this returned list a direct representation of the internal state of your class?". In that case, you might want to return a copy to avoid callers messing up your internal state i.e. maintain proper encapsulation.
Plan about the visibility of methods. Draw an explicit line between public, protected, package private and private methods. Ensure that you don't expose any more than you actually want to. Removing features is hard. If something is missing from your well designed API, you can add it later. But you expose a slew of useless public methods, you really can't upgrade your API without deprecating methods since you never know who else is using it.
If you are returning a collection, the first thing you should think about is should I protect myself from the caller changing my internal state e.g.
List list = myObject.getList();
list.retainAll(list2);
Now I have all the elements in common between list1 and list2 The problem is that myObject may not expect you to destroy the contents of the list it returned.
Two common ways to fix this are to take a defensive copy or to wrap the collection with a Collections.unmodifiableXxxx() For extra paranoia, you might do both.
The way I prefer to get around this is to avoid returning the collection at all. You can return a count and a method to get the n-th value or for a Map return the keys and provide a getter, or you can allow a visitor to each element. This way you don't expose your collection or need a copy.
Question is very generic but i want to add few points:
Except the method which you want to expose make other methods and variable private. Whole point is keep visibility to minimum.
Where ever possible make it immutable, this will reduce overhead in mutithreaded environment.
You might want to evaluate if serializability is to be supported or not. If not then dont provide default constructor. And if serializable then do evaluate serialized proxy pattern.

Java: Should I always replace Arrays for ArrayLists?

Well, it seems to me ArrayLists make it easier to expand the code later on both because they can grow and because they make using Generics easier. However, for multidimensional arrays, I find the readability of the code is better with standard arrays.
Anyway, are there some guidelines on when to use one or the other? For example, I'm about to return a table from a function (int[][]), but I was wondering if it wouldn't be better to return a List<List<Integer>> or a List<int[]>.
Unless you have a strong reason otherwise, I'd recommend using Lists over arrays.
There are some specific cases where you will want to use an array (e.g. when you are implementing your own data structures, or when you are addressing a very specific performance requirement that you have profiled and identified as a bottleneck) but for general purposes Lists are more convenient and will offer you more flexibility in how you use them.
Where you are able to, I'd also recommend programming to the abstraction (List) rather than the concrete type (ArrayList). Again, this offers you flexibility if you decide to chenge the implementation details in the future.
To address your readability point: if you have a complex structure (e.g. ArrayList of HashMaps of ArrayLists) then consider either encapsulating this complexity within a class and/or creating some very clearly named functions to manipulate the structure.
Choose a data structure implementation and interface based on primary usage:
Random Access: use List for variable type and ArrayList under the hood
Appending: use Collection for variable type and LinkedList under the hood
Loop and process: use Iterable and see the above for use under the hood based on producer code
Use the most abstract interface possible when handing around data. That said don't use Collection when you need random access. List has get(int) which is very useful when random access is needed.
Typed collections like List<String> make up for the syntactical convenience of arrays.
Don't use Arrays unless you have a qualified performance expert analyze and recommend them. Even then you should get a second opinion. Arrays are generally a premature optimization and should be avoided.
Generally speaking you are far better off using an interface rather than a concrete type. The concrete type makes it hard to rework the internals of the function in question. For example if you return int[][] you have to do all of the computation upfront. If you return List> you can lazily do computation during iteration (or even concurrently in the background) if it is beneficial.
The List is more powerful:
You can resize the list after it has been created.
You can create a read-only view onto the data.
It can be easily combined with other collections, like Set or Map.
The array works on a lower level:
Its content can always be changed.
Its length can never be changed.
It uses less memory.
You can have arrays of primitive data types.
I wanted to point out that Lists can hold the wrappers for the primitive data types that would otherwise need to be stored in an array. (ie a class Double that has only one field: a double) The newer versions of Java convert to and from these wrappers implicitly, at least most of the time, so the ability to put primitives in your Lists should not be a consideration for the vast majority of use cases.
For completeness: the only time that I have seen Java fail to implicitly convert from a primitive wrapper was when those wrappers were composed in a higher order structure: It could not convert a Double[] into a double[].
It mostly comes down to flexibility/ease of use versus efficiency. If you don't know how many elements will be needed in advance, or if you need to insert in the middle, ArrayLists are a better choice. They use Arrays under the hood, I believe, so you'll want to consider using the ensureCapacity method for performance. Arrays are preferred if you have a fixed size in advance and won't need inserts, etc.

Downsides to immutable objects in Java? [closed]

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The advantages of immutable objects in Java seem clear:
consistent state
automatic thread safety
simplicity
You can favour immutability by using private final fields and constructor injection.
But, what are the downsides to favouring immutable objects in Java?
i.e.
incompatibility with ORM or web presentation tools?
Inflexible design?
Implementation complexities?
Is it possible to design a large-scale system (deep object graph) that predominately uses immutable objects?
But, what are the downsides to
favouring immutable objects in Java?
incompatibility with ORM or web
presentation tools?
Reflection based frameworks are complicated by immutable objects since they requires constructor injection:
there are no default arguments in Java, which forces us to ALWAYS provide all of the necessary dependencies
constructor overriding can be messy
constructor argument names are not usually available through reflection, which forces us to depend on argument order for dependency resolution
Implementation complexities?
Creating immutable objects is still a boring task; the compiler should take care of the implementation details, as in groovy
Is it possible to design a large-scale system (deep object graph) that predominately uses immutable objects?
definitely yes; immutable objects makes great building blocks for other objects (they favor composition) since it's much easier to maintain the invariant of a complex object when you can rely on its immutable components. The only true downside to me is about creating many temporary objects (e.g. String concat was a problem in the past).
With immutability, any time you need to modify data, you need to create a new object. This can be expensive.
Imagine needing to modify one bit in an object that consumes several megabytes of memory: you would need to instantiate a whole new object, allocate memory, etc. If you need to do this many times, mutability becomes very attractive.
If you go for mutability then you will find that whenever you need to call a method that you don't want to have the object change, or you need to return an object that is part of the internal state, you need to make a defensive copy.
If you really look at programs that make use of mutible objects you will find that they are prone to "attack" by modifying:
objects passed to constructors
objects passed to methods
objects returned from methods.
The issue doesn't show up very often because most programs don't change the data (they are in reality immutable by virtue of them never changing).
I personally make every thing I possibly can final. I probably have 90%-95% of all variables (parameters, local, instance, static, exceptions, etc...) marked as final. There are some cases where it has to be mutable, but the vast majority of cases it does not.
I think it might depend on your focus. If you are writing libraries for 3rd parties to use you think about this much more than if you are writing an application that only you (or your team) will maintain.
I find that you can write large scale applications using immutable objects for the majority of the system without too much pain.
Fundamentally, in the real world, the state associated with many particular identities will change. If I ask what is "the present position of Joe's Buick", today it might be a location in Seattle, and tomorrow it might be a location in Los Alamos. It would be possible to define and create a GeographicLocation object whose value will always represent the location where Joe's Buick was at some particular moment in time and would never changes--if today it represents a spot in Seattle, then it will always do so. Such an object, however, would have no continuing identity as "the present location of Joe's Buick".
It may also be possible to define things so that there is a VehicleLocation object which is connected to Joe's Buick such that the object always represents "the present location of Joe's Buick". Such an object could retains its identity as "the present location of Joe's Buick", even as the car moves around, but would not represent a constant geographical location. Defining "identity" may be tricky if one considers the scenario where Joe sells his Buick to Bob and buys a Ford--should the object track "the present location of Joe's Ford" or "the present location of Bob's Buick"--but in many cases such issues may be avoided by using a data model that guarantees that some aspects of object identity will never change.
It isn't possible for everything about an object to be immutable. If an object is immutable, then it cannot have an immutable identity that encapsulates anything beyond its current state. If an object is mutable, however, it can have an immutable identity whose meaning transcends its present state. In many situations, having an immutable identity is more useful than having an immutable state, and in such situations mutable objects are nearly essential. While it is possible in some cases to "simulate" mutable objects by having an immutable object which would search through the most recent version of an immutable objects to find information that may "change" between one version and the next, such an approaches are often extremely inefficient. Even if one could magically receive once per minute a bound book that gave the location of every vehicle everywhere, looking up "Joe's Buick" in the book would take a lot longer than merely asking a "present location of Joe's Buick" object which would always know where the car was.
You pretty much answered your own question. The JavaBean specification, I don't believe, mentions anything about immutability, yet JavaBeans are the bread and butter of many Java frameworks.
The concept of immutable types is somewhat uncommon for people used to imperative programming styles. However, for many situations immutability has serious advantages, you named the most important ones already.
There are good ways to implement immutable balanced trees, queues, stacks, dequeues and other data structures. And in fact many modern programming languages / frameworks only support immutable strings because of their advantages and sometimes also other objects.
With an immutable object, if the value needs to be changed, then it must be replaced with a new instance. Depending on the lifecycle of the object, replacing it with a different instance can potentially increase the tenured (long) garbage collection time. This becomes more critical if the object is kept around in memory long enough to be placed in the tenured generation.
The problem in java is that one has to live with all those objects, where the class looks like:
class Mutable {
State1 f1;
MoreState f2;
void doSomething() { // mutate the state, but don't document it }
void doSomethingElse() /// mutate the state heavily, do not mention in doc
}
(Note the missing Cloneable interface).
The problem with the garbage collector is not such a big one nowadays. The VM's are happy with short living objects.
Advances in Compiler/JIT technology will make it possible, sooner or later, to optimize intermediate temporary object creation away. For example:
BigInteger three =, two =, i1 = ...;
BigInteger i2 = i1.mul(three).div(two);
The JIT could notice that the intermediate object i1.mul(three) can be used for the end result and call a variant of the div method that works on a mutable accumulator.
See Functional Java to attain a comprehensive answer to your question.
Immutability, as every other design pattern, should only be used when you need it. You give the example of thread safety: In a highly threaded application, you could favor immutability over the added expense of making it thread safe yourself.
However, if your design requires objects to be mutable, don't go out of your way to make them immutable, just because "it's a design pattern".
As for your graph, you could choose to make your nodes immutable and let another class take care of the connections between them, or you could make a mutable node that takes care of its own children and has an immutable value class.
Probably the biggest cost of using immutabile objects in Java is that future developers won't be expecting it or used to that style. Expect to either document heavily or watch alot of your objects spawn mutable peers over time.
That being said, the only real technical reason I can think of to avoid immutable objects is GC churn. For most applications, I don't think this is a compelling reason to avoid them.
The biggest thing I've ever done with a ~90% immutable objects was a toy scheme-esque interpreter, so its certainly possible to do complex Java projects.
in immutable data you dont set things twice... see haskell and scala vals (and clojure of cource)...
for example.. for a data structure.. like a tree, when you perform write operation to the tree, in fact you are adding elements outside of the immutable tree.. after you done.. the tree and the branch are recombined in a new tree.. so like this you could perform concurrent reads and writes very safelly..
in tradicional model, you must lock a value cause it could be reseted any time.. so.. you end up with a very heat zone for threads..since they act sequentially there anyway..
with imuttable data, you dont set things more than once.. its a whole new way of programming.. you may end up using a little bit more memory.. but parallelizing is natural and painless..
As with any tool, you have to know when to use it and when not to.
Like Tehblanx points out that if you want to change the state of a variable that holds an immutable object, you have to create a new object, which can be expensive, especially if the object is big and complex. Absolutely true, but that simply means that you have to intelligently decide which objects should be mutable and which should be immutable. If someone is saying that ALL objects should be immutable, well, that's just crazy talk.
I'd tend to say that objects that represent a single logical "fact" should be immutable, while objects that represent multiple facts should be mutable. Like, an Integer or a String should be immutable. A "Customer" object that contains name, address, current amount, date of last purchase, etc should be mutable. Of course I can immediately think of a hundred exceptions to such a general rule. An exception I make all the time is when I have a class that just exists as a wrapper to hold a primitive in some case where a primitive is not legal, like in a collection, but I need to update it constantly.
In Java, a method can't return multiple objects, like return a, b, c. Returning an array of objects makes the code look ugly. In this situation, I have to pass mutable objects to the method and let it change the states of these objects. However, I don't know whether returning multiple objects is a code smell or not.
The answer is none. There are not any good reasons to be mutable.
You do run in to problems with lots of frameworks(or framework versions) that require mutable objects in order to work with them(Spring I am glaring in your direction). As you work with them and fish through the code you will shake your fist in anger that you need to introduce dirty mutability into an otherwise glorious block of code when it could have been easily avoided.
I'm sure there are limited corner cases(probably more hypothetical that anything) where the overhead of object creation and collection is uncceptable. But I urge the people that would make this argument to look at languages like scala where included collections are immutable by default and then look at the bevy of performance critical apps built on top of that concept.
This is of course hyperbole. In reality, you should go with immutability first, see if it causes you any measurable problems, if it does then introduce mutability, but make sure you can prove it solves your problem. Otherwise you've just created liability for no benefit. In doing this I think you'll find objective cases for "Implementation Complexity" and "Inflexibility" very hard to make.
Some implementations of immutable objects have transactional means to update an immutable object. Similar to how databases provide safe commits and rollbacks. But in apparent contrast with many of the answers here. Immutable objects are never changed. A typical operation would be.
B = append(A,C)
B is a new object. Just like A and C. No modification was made to A or C. Internally a red black tree implementation makes such semantics fast enough to be usable.
The downside is that it is not as fast as making the operations in place. But that only compares a single part of the system. When evaluating possible downsides we need to look at the system as a whole. And I personally don't have a clear picture of the entire impact. Although I suspect immutability wins out at the end.
I know some experts contend there is contention at the top level of the red black tree. And that has a negative effect in throught-put.
My biggest worry with immutable data structures is how to save/reconstitute them. That is, if a class has final fields, I can't instantiate it and then set its fields.

Why are variables declared with their interface name in Java? [duplicate]

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What does it mean to "program to an interface"?
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Closed 6 years ago.
This is a real beginner question (I'm still learning the Java basics).
I can (sort of) understand why methods would return a List<String> rather than an ArrayList<String>, or why they would accept a List parameter rather than an ArrayList. If it makes no difference to the method (i.e., if no special methods from ArrayList are required), this would make the method more flexible, and easier to use for callers. The same thing goes for other collection types, like Set or Map.
What I don't understand: it appears to be common practice to create local variables like this:
List<String> list = new ArrayList<String>();
While this form is less frequent:
ArrayList<String> list = new ArrayList<String>();
What's the advantage here?
All I can see is a minor disadvantage: a separate "import" line for java.util.List has to be added. Technically, "import java.util.*" could be used, but I don't see that very often either, probably because the "import" lines are added automatically by some IDE.
When you read
List<String> list = new ArrayList<String>();
you get the idea that all you care about is being a List<String> and you put less emphasis on the actual implementation. Also, you restrict yourself to members declared by List<String> and not the particular implementation. You don't care if your data is stored in a linear array or some fancy data structure, as long as it looks like a List<String>.
On the other hand, reading the second line gives you the idea that the code cares about the variable being ArrayList<String>. By writing this, you are implicitly saying (to future readers) that you shouldn't blindly change actual object type because the rest of the code relies on the fact that it is really an ArrayList<String>.
Using the interface allows you to quickly change the underlying implementation of the List/Map/Set/etc.
It's not about saving keystrokes, it's about changing implementation quickly. Ideally, you shouldn't be exposing the underlying specific methods of the implementation and just use the interface required.
I would suggest thinking about this from the other end around. Usually you want a List or a Set or any other Collection type - and you really do not care in your code how exactly this is implemented. Hence your code just works with a List and do whatever it needs to do (also phrased as "always code to interfaces").
When you create the List, you need to decide what actual implementation you want. For most purposes ArrayList is "good enough", but your code really doesn't care. By sticking to using the interface you convey this to the future reader.
For instance I have a habit of having debug code in my main method which dumps the system properties to System.out - it is usually much nicer to have them sorted. The easiest way is to simply let "Map map = new TreeMap(properties);" and THEN iterate through them, as TreeMap returns the keys sorted.
When you learn more about Java, you will also see that interfaces are very helpful in testing and mocking, since you can create objects with behaviour specified at runtime conforming to a given interface. An advanced (but simple) example can be seen at http://www.exampledepot.com/egs/java.lang.reflect/ProxyClass.html
if later you want to change implementation of the list and use for example LinkedList(maybe for better performance) you dont have to change the whole code(and API if its library). if order doesnt matter you should return Collection so later on you can easily change it to Set if you would need items to be sorted.
The best explanation I can come up with (because I don't program in Java as frequently as in other languages) is that it make it easier to change the "back-end" list type while maintaining the same code/interface everything else is relying on. If you declare it as a more specific type first, then later decide you want a different kind... if something happens to use an ArrayList-specific method, that's extra work.
Of course, if you actually need ArrayList-specific behavior, you'd go with the specific variable type instead.
The point is to identify the behavior you want/need and then use the interface that provides that behavior. The is the type for your variable. Then, use the implementation that meets your other needs - efficiency, etc. This is what you create with "new". This duality is one of the major ideas behind OOD. The issue is not particularly significant when you are dealing with local variables, but it rarely hurts to follow good coding practices all the time.
Basically this comes from people who have to run large projects, possibly other reasons - you hear it all the time. Why, I don't actually know. If you have need of an array list, or Hash Map or Hash Set or whatever else I see no point in eliminating methods by casting to an interface.
Let us say for example, recently I learned how to use and implemented HashSet as a principle data structure. Suppose, for whatever reason, I went to work on a team. Would not that person need to know that the data was keyed on hashing approaches rather than being ordered by some basis? The back-end approach noted by Twisol works in C/C++ where you can expose the headers and sell a library thus, if someone knows how to do that in Java I would imagine they would use JNI - at which point is seems simpler to me to use C/C++ where you can expose the headers and build libs using established tools for that purpose.
By the time you can get someone who can install a jar file in the extensions dir it would seem to me that entity could be jus short steps away - I dropped several crypto libs in the extensions directory, that was handy, but I would really like to see a clear, concise basis elucidated. I imagine they do that all the time.
At this point it sounds to me like classic obfuscation, but beware: You have some coding to do before the issue is of consequence.

Why not always use ArrayLists in Java, instead of plain ol' arrays?

Quick question here: why not ALWAYS use ArrayLists in Java? They apparently have equal access speed as arrays, in addition to extra useful functionality. I understand the limitation in that it cannot hold primitives, but this is easily mitigated by use of wrappers.
Plenty of projects do just use ArrayList or HashMap or whatever to handle all their collection needs. However, let me put one caveat on that. Whenever you are creating classes and using them throughout your code, if possible refer to the interfaces they implement rather than the concrete classes you are using to implement them.
For example, rather than this:
ArrayList insuranceClaims = new ArrayList();
do this:
List insuranceClaims = new ArrayList();
or even:
Collection insuranceClaims = new ArrayList();
If the rest of your code only knows it by the interface it implements (List or Collection) then swapping it out for another implementation becomes much easier down the road if you find you need a different one. I saw this happen just a month ago when I needed to swap out a regular HashMap for an implementation that would return the items to me in the same order I put them in when it came time to iterate over all of them. Fortunately just such a thing was available in the Jakarta Commons Collections and I just swapped out A for B with only a one line code change because both implemented Map.
If you need a collection of primitives, then an array may well be the best tool for the job. Boxing is a comparatively expensive operation. For a collection (not including maps) of primitives that will be used as primitives, I almost always use an array to avoid repeated boxing and unboxing.
I rarely worry about the performance difference between an array and an ArrayList, however. If a List will provide better, cleaner, more maintainable code, then I will always use a List (or Collection or Set, etc, as appropriate, but your question was about ArrayList) unless there is some compelling reason not to. Performance is rarely that compelling reason.
Using Collections almost always results in better code, in part because arrays don't play nice with generics, as Johannes Weiß already pointed out in a comment, but also because of so many other reasons:
Collections have a very rich API and a large variety of implementations that can (in most cases) be trivially swapped in and out for each other
A Collection can be trivially converted to an array, if occasional use of an array version is useful
Many Collections grow more gracefully than an array grows, which can be a performance concern
Collections work very well with generics, arrays fairly badly
As TofuBeer pointed out, array covariance is strange and can act in unexected ways that no object will act in. Collections handle covariance in expected ways.
arrays need to be manually sized to their task, and if an array is not full you need to keep track of that yourself. If an array needs to be resized, you have to do that yourself.
All of this together, I rarely use arrays and only a little more often use an ArrayList. However, I do use Lists very often (or just Collection or Set). My most frequent use of arrays is when the item being stored is a primitive and will be inserted and accessed and used as a primitive. If boxing and unboxing every become so fast that it becomes a trivial consideration, I may revisit this decision, but it is more convenient to work with something, to store it, in the form in which it is always referenced. (That is, 'int' instead of 'Integer'.)
This is a case of premature unoptimization :-). You should never do something because you think it will be better/faster/make you happier.
ArrayList has extra overhead, if you have no need of the extra features of ArrayList then it is wasteful to use an ArrayList.
Also for some of the things you can do with a List there is the Arrays class, which means that the ArrayList provided more functionality than Arrays is less true. Now using those might be slower than using an ArrayList, but it would have to be profiled to be sure.
You should never try to make something faster without being sure that it is slow to begin with... which would imply that you should go ahead and use ArrayList until you find out that they are a problem and slow the program down. However there should be common sense involved too - ArrayList has overhead, the overhead will be small but cumulative. It will not be easy to spot in a profiler, as all it is is a little overhead here, and a little overhead there. So common sense would say, unless you need the features of ArrayList you should not make use of it, unless you want to die by a thousands cuts (performance wise).
For internal code, if you find that you do need to change from arrays to ArrayList the chance is pretty straight forward in most cases ([i] becomes get(i), that will be 99% of the changes).
If you are using the for-each look (for( value : items) { }) then there is no code to change for that as well.
Also, going with what you said:
1) equal access speed, depending on your environment. For instance the Android VM doesn't inline methods (it is just a straight interpreter as far as I know) so the access on that will be much slower. There are other operations on an ArrayList that can cause slowdowns, depends on what you are doing, regardless of the VM (which could be faster with a stright array, again you would have to profile or examine the source to be sure).
2) Wrappers increase the amount of memory being used.
You should not worry about speed/memory before you profile something, on the other hand you shouldn't choose what you know to be a slower option unless you have a good reason to.
Performance should not be your primary concern.
Use List interface where possible, choose concrete implementation based on actual requirements (ArrayList for random access, LinkedList for structural modifications, ...).
You should be concerned about performance.
Use arrays, System.arraycopy, java.util.Arrays and other low-level stuff to squeeze out every last drop of performance.
Well don't always blindly use something that is not right for the job. Always start off using Lists, choose ArrayList as your implementation. This is a more OO approach. If you don't know that you specifically need an array, you'll find that not tying yourself to a particular implementation of List will be much better for you in the long run. Get it working first, optimize later.

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