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connect to existing neo4j database in java

I newly start to work with neo4j.when I want to connect to existing db on windows everything work fine, my app find db and run my business, but in Linux I catch Error starting org.neo4j.kernel.impl.factory.CommunityFacadeFactory, /opt/neo4j-community-3.0.0-M04/data/databases/graph.db exception.
I use version 2.3.3
<dependency>
<groupId>org.neo4j</groupId>
<artifactId>neo4j</artifactId>
<version>2.3.3</version>
</dependency>
my code:
GraphDatabaseService graphDb = null;
try {
// graphDb = new GraphDatabaseFactory().newEmbeddedDatabase("/opt/neo4j-community-3.0.0-M04/data/databases/graph.db");
graphDb = new GraphDatabaseFactory().newEmbeddedDatabaseBuilder(new File("/opt/neo4j-community-3.0.0-M04/data/databases/graph.db")).
setConfig("org.neo4j.server.database.location", "/opt/neo4j-community-3.0.0-M04/data/databases/graph.db").
setConfig("allow_store_upgrade","true").
// loadPropertiesFromFile("/opt/neo4j-community-3.0.0-M04/conf/neo4j.conf").
newGraphDatabase();
} catch (Exception e) {
System.out.println("e = " + e.getMessage());
e.printStackTrace();
}
registerShutdownHook(graphDb);
how can I connect to existing db in linux.
thank you.
adding stacktrace
e = Error starting org.neo4j.kernel.impl.factory.CommunityFacadeFactory, /opt/neo4j-community-3.0.0-M04/data/databases/graph.db
java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.CommunityFacadeFactory, /opt/neo4j-community-3.0.0-M04/data/databases/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:143)
at org.neo4j.kernel.impl.factory.CommunityFacadeFactory.newFacade(CommunityFacadeFactory.java:43)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:108)
at org.neo4j.graphdb.factory.GraphDatabaseFactory.newDatabase(GraphDatabaseFactory.java:129)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:117)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:185)
at org.neo4j.graphdb.factory.GraphDatabaseFactory.newEmbeddedDatabase(GraphDatabaseFactory.java:79)
at org.neo4j.graphdb.factory.GraphDatabaseFactory.newEmbeddedDatabase(GraphDatabaseFactory.java:74)
at ir.isc.mot.BigDataWorkGroup.main(BigDataWorkGroup.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.NeoStoreDataSource#32b7faea' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:462)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:111)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:112)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:452)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:111)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:139)
... 8 more
Caused by: org.neo4j.kernel.impl.storemigration.UpgradeNotAllowedByConfigurationException: Failed to start Neo4j with an older data store version. To enable automatic upgrade, please set configuration parameter "allow_store_upgrade=true"
at org.neo4j.kernel.impl.storemigration.ConfigMapUpgradeConfiguration.checkConfigurationAllowsAutomaticUpgrade(ConfigMapUpgradeConfiguration.java:39)
at org.neo4j.kernel.impl.storemigration.StoreUpgrader.migrateIfNeeded(StoreUpgrader.java:135)
at org.neo4j.kernel.NeoStoreDataSource.upgradeStore(NeoStoreDataSource.java:636)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:452)
... 13 more

neo4j Exception when stopping org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource

When shutting down the noo4j DB I receive this error:
[org.neo4j]: Exception when stopping org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#45673f68 java.nio.DirectByteBuffer[pos=16 lim=1048576 cap=1048576], 1586985
java.lang.IllegalArgumentException: java.nio.DirectByteBuffer[pos=16 lim=1048576 cap=1048576], 1586985
at org.neo4j.test.impl.EphemeralFileSystemAbstraction$DynamicByteBuffer.put(EphemeralFileSystemAbstraction.java:966)
at org.neo4j.test.impl.EphemeralFileSystemAbstraction$EphemeralFileData.write(EphemeralFileSystemAbstraction.java:680)
at org.neo4j.test.impl.EphemeralFileSystemAbstraction$EphemeralFileChannel.write(EphemeralFileSystemAbstraction.java:488)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:160)
at org.neo4j.kernel.impl.nioneo.store.CommonAbstractStore$1.perform(CommonAbstractStore.java:579)
at org.neo4j.kernel.impl.util.FileUtils.windowsSafeIOOperation(FileUtils.java:367)
at org.neo4j.kernel.impl.nioneo.store.CommonAbstractStore.close(CommonAbstractStore.java:572)
at org.neo4j.kernel.impl.nioneo.store.NeoStore.closeStorage(NeoStore.java:289)
at org.neo4j.kernel.impl.nioneo.store.CommonAbstractStore.close(CommonAbstractStore.java:552)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:507)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.shutdown(LifeSupport.java:185)
at org.neo4j.kernel.InternalAbstractGraphDatabase.shutdown(InternalAbstractGraphDatabase.java:822)
at org.neo4j.test.ImpermanentGraphDatabase.shutdown(ImpermanentGraphDatabase.java:170)
at org.springframework.data.neo4j.support.DelegatingGraphDatabase.shutdown(DelegatingGraphDatabase.java:270)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at org.springframework.beans.factory.support.DisposableBeanAdapter.invokeCustomDestroyMethod(DisposableBeanAdapter.java:350)
at org.springframework.beans.factory.support.DisposableBeanAdapter.destroy(DisposableBeanAdapter.java:273)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroyBean(DefaultSingletonBeanRegistry.java:565)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroySingleton(DefaultSingletonBeanRegistry.java:541)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.destroySingleton(DefaultListableBeanFactory.java:870)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroySingletons(DefaultSingletonBeanRegistry.java:510)
at org.springframework.context.support.AbstractApplicationContext.destroyBeans(AbstractApplicationContext.java:908)
at org.springframework.context.support.AbstractApplicationContext.doClose(AbstractApplicationContext.java:884)
at org.springframework.context.support.AbstractApplicationContext$1.run(AbstractApplicationContext.java:804)
Caused by: java.lang.IllegalArgumentException
at java.nio.Buffer.position(Buffer.java:244)
at org.neo4j.test.impl.EphemeralFileSystemAbstraction$DynamicByteBuffer.put(EphemeralFileSystemAbstraction.java:962)
... 31 more
2014-11-20 18:31:03.775+0000 ERROR [org.neo4j]: Exception when stopping org.neo4j.kernel.impl.transaction.XaDataSourceManager#4fd91628 Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#45673f68' failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#45673f68' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.shutdown(LifeSupport.java:185)
at org.neo4j.kernel.InternalAbstractGraphDatabase.shutdown(InternalAbstractGraphDatabase.java:822)
I assume it is caused by a timeout, as it only appears when instantiating a large number of nodes (> 100K). However, I do not find a way to set up any timeout using the setConfig/GraphDatabaseSettings APIs (unfortunately we cannot use a property file):
public GraphDatabaseService graphDatabaseService() {
GraphDatabaseService graphDb = new GraphDatabaseFactory()
.newEmbeddedDatabaseBuilder("db/my.db")
.setConfig( GraphDatabaseSettings.nodestore_mapped_memory_size, "10M" )
.newGraphDatabase();
Do you know what is the root cause of the issue and how to circumvent it?
Thanks
F.

Error while applying OWSM policies on Web service created from Jdeveloper 11g (SEVERE: java.io.FileNotFoundException: .\config\jps-config.xml)

I created sample class Testws with one simple method sayHi(String name) that simply showing welcome message. The target is to create web service application for this class and applying OWSM policies.
All the needed file is generated from Jdeveloper 11.1.1.7 and I added the oracle/wss_username_token_client_policy to the client side in TestwsPortClient. Problem is that when I run the main method from TestwsPortClient I got the following error:
SEVERE: java.io.FileNotFoundException: .\config\jps-config.xml (The system cannot find the path specified)
Although I tried (But it did not work) to set the system propriety to find the missing file as follow:
System.setProperty("oracle.security.jps.config",
"C:\\Users\\user\\AppData\\Roaming\\JDeveloper\\system11.1.1.7.40.64.93\\DefaultDomain\\config\\fmwconfig\\jps-config.xml");
Here is the Client Class TestwsPortClient:
public static void main(String[] args) {
testwsService = new TestwsService();
SecurityPoliciesFeature securityFeatures =
new SecurityPoliciesFeature(new String[] { "oracle/wss_username_token_client_policy" });
Testws testws = testwsService.getTestwsPort(securityFeatures);
// Add your code to call the desired methods.
System.setProperty("oracle.security.jps.config",
"C:\\Users\\user\\AppData\\Roaming\\JDeveloper\\system11.1.1.7.40.64.93\\DefaultDomain\\config\\fmwconfig\\jps-config.xml");
List<CredentialProvider> credProviders =new ArrayList<CredentialProvider>();
String username = "weblogic";
String password = "weblogic1";
CredentialProvider cp =new ClientUNTCredentialProvider(username.getBytes(), password.getBytes());
credProviders.add(cp);
Map<String, Object> rc = ((BindingProvider)testws).getRequestContext();
rc.put(WSSecurityContext.CREDENTIAL_PROVIDER_LIST, credProviders);
testws.sayHi("Salman");
}
Here the exception stack trace:
Note: the stack trace is too long this is just part of it where I think it will gives an idea about the error
SEVERE: java.io.FileNotFoundException: .\config\jps-config.xml (The system cannot find the path specified)
SEVERE: java.io.FileNotFoundException: .\config\jps-config.xml (The system cannot find the path specified)
INFO: WSM-09004 Component auditing cannot be initialized.
INFO: Recipient Alias property not configured in the policy. Defaulting to encrypting with signers certificate.
WARNING: JPS-00065 Jps platform factory creation failed. Reason: java.lang.ClassNotFoundException: oracle.security.jps.se.JpsSEPlatformFactory.
WARNING: JPS-00065 Jps platform factory creation failed. Reason: {0}.
......
at $Proxy34.sayHi(Unknown Source)
at test.TestwsPortClient.main(TestwsPortClient.java:44)
Caused by: oracle.security.jps.JpsException: JPS-00065: Jps platform factory creation failed. Reason: java.lang.ClassNotFoundException: oracle.security.jps.se.JpsSEPlatformFactory.
at oracle.security.jps.ee.JpsPlatformFactory$2.run(JpsPlatformFactory.java:197)
at oracle.security.jps.ee.JpsPlatformFactory$2.run(JpsPlatformFactory.java:190)
........

Sonar stops working every few days: jdbc connection error

I have a Sonar server which is used once a day from maven/jenkins and every few days, say every 4 or 5 days, it crashes and and shows the message "We're sorry, but something went wrong".
In the log, the error is always about a jdbc connection problem. I thought that it was a problem with the database but then if I restart the sonar server everything goes fine again.
So, it looks like a memory leak or something in the sonar server that makes it crash every few days until someone restarts it. Does that makes sense?. This is the configuration I have:
sonar.jdbc.username: xxxx
sonar.jdbc.password: xxxx
sonar.jdbc.url: jdbc:mysql://x.x.x.x:3306/sonar?useUnicode=true&characterEncoding=utf8&rewriteBatchedStatements=true
#----- Connection pool settings
sonar.jdbc.maxActive: 20
sonar.jdbc.maxIdle: 5
sonar.jdbc.minIdle: 2
sonar.jdbc.maxWait: 5000
sonar.jdbc.minEvictableIdleTimeMillis: 600000
sonar.jdbc.timeBetweenEvictionRunsMillis: 30000
sonar.updatecenter.activate=true
http.proxyHost=xxxx
http.proxyPort=3128
sonar.notifications.delay=60
That's it. And this is the error log:
INFO o.s.s.p.ServerImpl SonarQube Server / 3.7.3 /
INFO o.s.c.p.Database Create JDBC datasource for jdbc:mysql://x.x.x.x:3306/sonar?useUnicode=true&characterEncoding=utf8&rewriteBatchedStatements=true
ERROR o.s.c.p.Database Can not connect to database.
Please check connectivity and settings (see the properties prefixed by 'sonar.jdbc.').
org.apache.commons.dbcp.SQLNestedException:
Cannot create PoolableConnectionFactory (Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.)
.
.
.
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException:
Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
.
.
.
Caused by: java.net.ConnectException: Connection refused
.
.
.
INFO jruby.rack An exception happened during JRuby-Rack startup
no connection available
--- System
jruby 1.6.8 (ruby-1.8.7-p357) (2012-09-18 1772b40) (Java HotSpot(TM) 64-Bit Server VM 1.6.0_43) [linux-amd64-java]
Time: Thu Jan 02 08:04:08 -0500 2014
Server: jetty/7.6.11.v20130520
jruby.home: file:/opt/sonar/war/sonar-server/WEB-INF/lib/jruby-complete-1.6.8.jar!/META-INF/jruby.home
--- Context Init Parameters:
jruby.compat.version = 1.8
jruby.max.runtimes = 1
jruby.min.runtimes = 1
jruby.rack.logging = slf4j
public.root = /
rails.env = production
--- Backtrace
ActiveRecord::ConnectionNotEstablished: no connection available
set_native_database_types at arjdbc/jdbc/RubyJdbcConnection.java:517
initialize at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-jdbc-adapter-1.1.3/lib/arjdbc/jdbc/connection.rb:61
initialize at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-jdbc-adapter-1.1.3/lib/arjdbc/jdbc/adapter.rb:31
jdbc_connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-jdbc-adapter-1.1.3/lib/arjdbc/jdbc/connection_methods.rb:6
send at org/jruby/RubyKernel.java:2109
new_connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:223
checkout_new_connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:245
checkout at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:188
loop at org/jruby/RubyKernel.java:1439
checkout at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:184
mon_synchronize at file:/opt/sonar/war/sonar-server/WEB-INF/lib/jruby-complete-1.6.8.jar!/META-INF/jruby.home/lib/ruby/1.8/monitor.rb:191
checkout at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:183
connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:98
retrieve_connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_pool.rb:326
retrieve_connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_specification.rb:123
connection at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/connection_adapters/abstract/connection_specification.rb:115
initialize at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/migration.rb:440
up at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/migration.rb:401
migrate at /opt/sonar/war/sonar-server/WEB-INF/gems/gems/activerecord-2.3.15/lib/active_record/migration.rb:383
upgrade_and_start at /opt/sonar/war/sonar-server/WEB-INF/lib/database_version.rb:62
automatic_setup at /opt/sonar/war/sonar-server/WEB-INF/lib/database_version.rb:74
(root) at /opt/sonar/war/sonar-server/WEB-INF/config/environment.rb:213
load at org/jruby/RubyKernel.java:1087
load_environment at /opt/sonar/war/sonar-server/WEB-INF/config/environment.rb:23
load_environment at file:/opt/sonar/war/sonar-server/WEB-INF/lib/jruby-rack-1.1.10.jar!/jruby/rack/rails_booter.rb:65
(root) at <script>:1
--- RubyGems
Gem.dir: /opt/sonar/war/sonar-server/WEB-INF/gems
Gem.path:
/opt/sonar/war/sonar-server/WEB-INF/gems
Activated gems:
rake-0.9.2.2
activesupport-2.3.15
activerecord-2.3.15
rack-1.1.3
actionpack-2.3.15
actionmailer-2.3.15
activeresource-2.3.15
rails-2.3.15
color-tools-1.3.0
i18n-0.4.2
json-jruby-1.2.3-universal-java-1.6
activerecord-jdbc-adapter-1.1.3
fastercsv-1.4.0
--- Bundler
undefined method `bundle_path' for Bundler:Module
--- JRuby-Rack Config
compat_version = RUBY1_8
default_logger = org.jruby.rack.logging.StandardOutLogger#4fbbe4e1
err = java.io.PrintStream#d2284af
filter_adds_html = true
filter_verifies_resource = false
ignore_environment = false
initial_memory_buffer_size =
initial_runtimes = 1
jms_connection_factory =
jms_jndi_properties =
logger = org.jruby.rack.logging.Slf4jLogger#566dc8f0
logger_class_name = slf4j
logger_name = jruby.rack
maximum_memory_buffer_size =
maximum_runtimes = 1
num_initializer_threads =
out = java.io.PrintStream#6aeeefcf
rackup =
rackup_path =
rewindable = true
runtime_arguments =
runtime_timeout_seconds =
serial_initialization = false
servlet_context = ServletContext#o.e.j.w.WebAppContext{/,file:/opt/sonar/war/sonar-server/},file:/opt/sonar/war/sonar-server
ERROR jruby.rack unable to create shared application instance
org.jruby.rack.RackInitializationException: no connection available
.
.
.
org.jruby.exceptions.RaiseException:
(ConnectionNotEstablished) no connection available
.
.
.
ERROR jruby.rack Error: application initialization failed
org.jruby.rack.RackInitializationException: no connection available
.
.
.
org.jruby.exceptions.RaiseException:
(ConnectionNotEstablished) no connection available
Any help will be appreciated :)

This sounds familiar to me :P Try asking your operators if they have some automated 'cleansing' operation that just kills periodically open database connections automatically in order to prevent leaked connections to the database.

It happened to me, in a Windows 2012 Server and SQL Server 2012 database in a different server. It seems that sonar service maintains a connection open, created at start up time, so any disconnection (networking, database restart, etc.) causes this unrecoverable connection problem. Restarting the Sonar (SonarQube) Windows service solved the problem to me. But, if this problem is frequent, as in your case, it would be a good idea to schedule a service restart task, or find out what is taking the connection down.

Java Connection Pool with BoneCP STRANGE error

I'm a newbie of java programming, and I'm trying to learning.
I have a database mysql and I manage the connection with connection Pool, BoneCP is the library that I use.
The code for create a Pool is this:
BoneCPConfig config = new BoneCPConfig(); // create a new configuration object
config.setJdbcUrl( R.database.url + R.database.dbName ); // set the JDBC url
config.setUsername( R.database.userName ); // set the username
config.setPassword( R.database.password ); // set the password
config.setMinConnectionsPerPartition(2);
config.setMaxConnectionsPerPartition(5);
config.setPartitionCount( 3 );
try{
connectionPool = new BoneCP( config ); // setup the connection pool
}catch( Exception e ){
System.out.println( e );
}
When i need the connection for send query to DB i catch the connection with this line of code:
conn = R.database.connectionPool.getConnection();
I think is all ok at this point and I haven't any errors.
After a min the console say this:
[BoneCP-pool-watch-thread] ERROR com.jolbox.bonecp.BoneCP - Failed to acquire connection to jdbc:mysql://localhost:3306/test_db. Sleeping for 7000 ms. Attempts left: 0
java.sql.SQLException: No suitable driver found for jdbc:mysql://localhost:3306/test_db
at java.sql.DriverManager.getConnection(DriverManager.java:596)
at java.sql.DriverManager.getConnection(DriverManager.java:215)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:363)
at com.jolbox.bonecp.BoneCP.obtainInternalConnection(BoneCP.java:269)
at com.jolbox.bonecp.ConnectionHandle.<init>(ConnectionHandle.java:242)
at com.jolbox.bonecp.PoolWatchThread.fillConnections(PoolWatchThread.java:115)
at com.jolbox.bonecp.PoolWatchThread.run(PoolWatchThread.java:82)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:744)
[BoneCP-pool-watch-thread] ERROR com.jolbox.bonecp.CustomThreadFactory - Uncaught Exception in thread BoneCP-pool-watch-thread
java.lang.NoClassDefFoundError: com/jolbox/bonecp/hooks/ConnectionState
at com.jolbox.bonecp.ConnectionHandle.markPossiblyBroken(ConnectionHandle.java:382)
at com.jolbox.bonecp.ConnectionHandle.<init>(ConnectionHandle.java:244)
at com.jolbox.bonecp.PoolWatchThread.fillConnections(PoolWatchThread.java:115)
at com.jolbox.bonecp.PoolWatchThread.run(PoolWatchThread.java:82)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:744)
This is the strange problem!!
Thank very much!!

No suitable driver found for jdbc:mysql://localhost:3306/test_db
This seems to imply that you don't have a java MySQL JDBC driver on your classpath, have a look at the available connectors for MySQL and make sure the appropriate JAR including this driver is on your classpath.
MySQL Connectors