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How to run java project from command line (works fine in eclipse, gradle)

I'v got a simple java program. I'm developing in Eclipse, using gradle, and I'm logging with log4j2. This all works fine.
When I come to run from the command line, I do a gradlew build which works, but when I run the jar I get an error:
java -jar build\libs\testproj.jar
Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/logging/log4j/LogManager
at com.xxxxxx.practice.App.<clinit>(App.java:17)
Caused by: java.lang.ClassNotFoundException: org.apache.logging.log4j.LogManager
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:602)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
... 1 more
I can see a bunch of log4j files in my userprofile.gradle folder, and I could run a gradle dist task and then got and unzip the resulting zip file and then point at the contents of that, but if there some way of avoiding this? Surely there's something I can add to the manifest or something so that I can run from the command line at will with no overhead?
To be clear, it's just the logging that has this problem. Other than that it runs, the tests work etc from the command line, and the logging works fine from eclipse.

Someplace in your eclipse project, you'll find a library (these end in .jar) named log4j.jar or org.apache.logging-log4j.jar or log4j-api.jar or something along those lines.
This jar contains the classes that are missing when you run this on the command line. Try it: jar tvf log4j.jar prints the contents of the jar and you'll find it contains, for example, org/apache/logging/log4j/LogManager.class.
During compilation and during running a java app, this class needs to be on the classpath. Eclipse is taking care of the compilation part of it.
If you run java as java com.foo.ClassName, the classpath is defined by the -cp parameter: java -cp testproj.jar:log4j.jar com.foo.yourapp.TestApp would work (use semicolon on windows instead). If you don't specify it, the system environment variable CLASSPATH is used, but you don't want that (you can run multiple java apps on one machine after all, so a global setting makes little sense).
If you run java using java -jar myjar.jar however, the classpath is solely taken from the jar file itself; inside the jar file is a file called META-INF/MANIFEST.MF and it contains (in text) key/value pairs. The relevant one is the Class-Path: foo.jar bar.jar entry: Space-separated listings of jar files, relative to the dir your jar is in.
You cannot use the -cp option when using the -jar option; the -cp option is ignored.
So, next steps:
I don't know if gradle made the Class-Path entry correctly. Best option is to use the jar or zip tool to unpack your jar to check that MANIFEST.MF file and see what's there. If there is, say, Class-Path: lib/log4j.jar in that file, then make sure that if testapp.jar is at /Users/Dev123456/project/testapp.jar, that that log4j jar is at /Users/Dev123456/project/lib/log4j.jar. If there is no class-path entry, then the error lies in your gradle config; you'd have to post your build.gradle file in that case.
There are 'striper plugins' which mix all the various jars together in one giant jar. This is usually a bad idea (it just makes the jar itself humongous, and makes builds take longer. If you're deploying java code to a server, you can manage the Class-Path entry by yourself, and if you are making a desktop app, you need an installer which... can manage the class-path stuff just as well. Really no reason to use stripers). I advise against using these.
Just run with java -cp yourapp.jar:dep1.jar:dep2.jar com.foo.fullyqualified.ClassName instead.

Try to run your jar by specifying Log4j jar as well in classpath and then mention your MainClass from testproj.jar :
java -cp build\libs\testproj.jar:build\libs\log4j.jar com.package.MainClass

Running jar file from cmd with reference to external jars

I would like to know can I run a jar file from the command, with the jar file using log4j and ojdbc.jar as well.
The 'main' is located in: nmap_logic.jar.
Within the package containing the 'main' is called: "nn.gmap.logic".
I also use 2 external jar files: log4j.jar & ojdbc.jar.
I have tried running:
java -cp "nmap_logic.jar;log4j.jar;ojdbc.jar" nn.gmap.logic.NNmain
And I get an error that the log4j cannot be initialized.
From the Eclipse environment the application runs fine.
Please let me know how should I execute the command properly.
Thanks.

Try to give the full path to the jars. I believe that there is a difference between what you think is your root folder and what Java thinks about it.
Something like java -cp "c:\myjars\nmap_logic.jar;c:\myjars\log4j.jar;c:\myjars\ojdbc.jar" nn.gmap.logic.NNmain
Btw, you can also do the following: java -cp "c:\myjars\*" nn.gmap.logic.NNmain

.jar file only works when used in Eclipse

I'm using a .jar file which I imported to Eclipse, and when I used Eclipse to run the application is works just fine.
But when I try running it from the command line with just the command java ClassName I get a NoClassDefFoundError message.
The .jar file is in the same directory as the main class I need to run.
I tried using the classpath command in the terminal
java -classpath pack.jar ClassName
but I got the same error but this time it was in the main thread
Exception in thread "main" java.lang.NoClassDefFoundError
Why does my program work in Eclipse but not on its own?

I guess you'll need to use: java -classpath .:pack.jar ClassName.

NoClassDefFoundError will come if a class was present during compile time but not available in java classpath during runtime.
Its Not Even Close To Being equal to ClassNotFoundException n u mustn't confuse them together, so u need to include the whoe path of the .jar file,
use the previously explained technique to do so, or if it was a jar file that want use frequently without using the call to java -classpath .. thing try importing the file into the OS class path directory.

I can't load the JDBC driver for MySQL

I've been trying to load the JDBC MySQL connector with the following code:
import java.sql.*;
public class dbTest{
public static void main(String[] args) throws SQLException, ClassNotFoundException
{
Class.forName("com.mysql.jdbc.Driver");
}
}
And I keep getting a class not found exception:
java.lang.ClassNotFoundException
at edu.rice.cs.plt.reflect.PathClassLoader.findClass(PathClassLoader.java:148)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Unknown Source)
at dbTest.main(dbTest.java:6)
I have added the path to the driver (mysql-connector-java-3.1.14-bin.jar) to my classpath and double checked to make sure it was correct. I also added copies of the jar to the ext folder of my Java installation based on what I read from this article: http://www.developer.com/java/data/jdbc-and-mysql-installation-and-preparation-of-mysql.html
I also searched through posts of others who have had this problem, but all of the responses so far have been saying to add the connector jar to the classpath, which I have already done.
Any help would be greatly appreciated.

I have added the path to the driver
(mysql-connector-java-3.1.14-bin.jar)
to my classpath
The exception tells you that you didn't do it correctly.
How are you setting CLASSPATH? If it's an environment variable, you're going to learn that IDEs and app servers ignore it. Don't use it.
Don't put it in the /ext directory of your Java JDK, either.
The right way to do it depends on how you're using it:
If you're running inside an IDE like Eclipse or IntelliJ, you have to add the JAR to a library.
IF you're running in a command shell, use the -p option for javac.exe when you compile and java.exe when you run.
If you're using it in a web app, you can start by putting it in the WEB-INF/lib directory of your WAR file. If you're using a servlet/JSP engine like Tomcat 6, put it in the Tomcat /lib directory.

On IntelliJ this is how I solved this problem:
File > Project Structure > Libraries > +
Locate the jdbc connector. For me it was on C:\Users\MyName.InteliJIdea13\config\jdbc-drivers

There are two classpaths in java. Build path and run path. Build path is used when compiling .java files into .class files. In a language like C you have a linker stage that fills in all the missing symbols when you run the linker on a bunch of object files. Thats why for .exe(windows) or other native binaries(linux) there is no run path. Java is slightly different because the compiled .class definitions get loaded by the jvm as they are needed.
What the net out of this is that you have to supply a runtime classpath to the jvm. At the command line you use java.exe which searches a few places by default including $CLASSPATH, the current directory/lib, and whatever you supply to the -cp option.
IDEs are different from the command line because they are attempting to shield you from some of the nastiness of running java.exe and supplying the locations where all the .class files are(which would be onerous on a large project).
Most IDE's have some sort of "Run Configuration" tab that allows you to specify certain libraries or locations with classes that will be used when you run your application. Below is how to set the run path in eclipse,netbeans, and intellij.
http://javahowto.blogspot.com/2006/06/set-classpath-in-eclipse-and-netbeans.html
http://www.jetbrains.com/idea/webhelp/run-debug-configuration-application.html

Java - Difficulty installing program from 3 separate .jar files (involves CLASSPATH)

I'm having a little trouble running some Java code, which requires three .jar files to be used. I'm at a lost as to what to do with them--I've tried setting the CLASSPATH (and following the instructions for how to do so in the readme files), but to no avail.
I was wondering if someone could walk me through it? I'd imagine three .jar files would be an easy install for someone who knows what they're doing.
If it helps, I'm using Ubuntu pretty much right out of the box (but I do have JDK and Eclipse installed!)
Runtime library: http://cogcomp.cs.illinois.edu/download/software/20
Additional .jar needed: http://cogcomp.cs.illinois.edu/download/software/23
Program I ultimately need to run: http://cogcomp.cs.illinois.edu/download/software/26
If you're willing to help, I can't thank you enough--you deserve a million kudos!
G

Those are all JAR files. When you execute a JAR file by doubleclicking or using java -jar, the CLASSPATH environment variable and the -cp and -classpath arguments are ignored. The classpath should be defninied in META-INF/MANIFEST.MF file of the JAR. In this particular case, only the second and third JAR have a Class-Path entry in the manifest file:
Class-Path: LBJ2Library.jar
Which is the first JAR. The classpath is telling that it is expecting the LBJ2Library.jar to be in the same folder as the JAR you'd like to execute (either the second or third one).
So, just drop them all in the same folder and execute by java -jar LBJPOS.jar.

If you are using java -jar to run your jar files, then the CLASSPATH variable is ignored. If you are using java -jar, you have two options:
Combine the three jars into one jar.
Run the main class directory and don't use -jar.

Use of the CLASSPATH environment variable is generally discouraged nowadays. This is how it's done (on Linux):
java -cp library1.jar:library2.jar:mainapp.jar <fully qualified name of main class>

You need to set the CLASSPATH .place all the 3 jars in a folder , name it as lib
See below to set classpath
set CLASSPATH=%CLASSPATH%:lib;