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Maven deploy non jar file on to nexus repository using bamboo

I want to deploy my build file (format *.cba) to nexus repository using Bamboo. This build file was generated by ANT. I am using maven deploy command without pom file as bamboo task within a stage. Command below.
The build file *.cba is a shared artifact.
-X deploy:deploy-file
-Dfile=${bamboo.artifacts.path.buildFile}
-Dpackaging=cba
-Durl=https://nexus.internal.organisation.com/content/repositories/snapshots/
-DrepositoryId=snapshots
-DgroupId=com.organisation.art
-DartifactId=myproject
-Dversion=0.0.1-SNAPSHOT
When bamboo runs this command, I am always getting this error.
[INFO] Downloading: https://nexus.internal.organisation.com/content/repositories/art-snapshots/com/organisation/art/myproject/0.0.1-SNAPSHOT/maven-metadata.xml
[WARNING] Could not transfer metadata com.organisation.art:myproject:0.0.1-SNAPSHOT/maven-metadata.xml from/to art-snapshots (https://nexus.internal.organisation.com/content/repositories/art-snapshots/): /home/art/username/work/SILF/.m2/repository/com/organisation/art/myproject/0.0.1-SNAPSHOT/maven-metadata-art-snapshots.xml.part.lock (No such file or directory)
org.eclipse.aether.transfer.MetadataTransferException: Could not transfer metadata com.organisation.art:myproject:0.0.1-SNAPSHOT/maven-metadata.xml from/to art-snapshots (https://nexus.internal.organisation.com/content/repositories/art-snapshots/): /home/art/username/work/SILF/.m2/repository/com/organisation/art/myproject/0.0.1-SNAPSHOT/maven-metadata-art-snapshots.xml.part.lock (No such file or directory)
at org.eclipse.aether.connector.basic.MetadataTransportListener.transferFailed(MetadataTransportListener.java:43)
at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run(BasicRepositoryConnector.java:355)
at org.eclipse.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:67)
at org.eclipse.aether.connector.basic.BasicRepositoryConnector$DirectExecutor.execute(BasicRepositoryConnector.java:581)
at org.eclipse.aether.connector.basic.BasicRepositoryConnector.get(BasicRepositoryConnector.java:222)
at org.eclipse.aether.internal.impl.DefaultDeployer.upload(DefaultDeployer.java:417)
at org.eclipse.aether.internal.impl.DefaultDeployer.deploy(DefaultDeployer.java:290)
at org.eclipse.aether.internal.impl.DefaultDeployer.deploy(DefaultDeployer.java:245)
at org.eclipse.aether.internal.impl.DefaultRepositorySystem.deploy(DefaultRepositorySystem.java:413)
at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:139)
at org.apache.maven.plugin.deploy.AbstractDeployMojo.deploy(AbstractDeployMojo.java:167)
at org.apache.maven.plugin.deploy.DeployFileMojo.execute(DeployFileMojo.java:310)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:207)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:307)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:193)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:106)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:863)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:199)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: java.io.FileNotFoundException: /home/art/username/work/SILF/.m2/repository/com/organisation/art/myproject/0.0.1-SNAPSHOT/maven-metadata-art-snapshots.xml.part.lock (No such file or directory)
at java.io.RandomAccessFile.open0(Native Method)
at java.io.RandomAccessFile.open(RandomAccessFile.java:316)
at java.io.RandomAccessFile.(RandomAccessFile.java:243)
at org.eclipse.aether.connector.basic.PartialFile$LockFile.tryLock(PartialFile.java:123)
at org.eclipse.aether.connector.basic.PartialFile$LockFile.lock(PartialFile.java:71)
at org.eclipse.aether.connector.basic.PartialFile$LockFile.(PartialFile.java:58)
at org.eclipse.aether.connector.basic.PartialFile$Factory.newInstance(PartialFile.java:210)
at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask(BasicRepositoryConnector.java:432)
at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run(BasicRepositoryConnector.java:350)
... 32 more
I am thinking there is some problem with the versioning. Any help?

I am able to solve this issue using the below command. Hope this will help.
mvn deploy:deploy-file
-Dfile=${bamboo.artifacts.path.cbaFile}
-Dpackaging=cba
-DgeneratePom=false
-DupdateReleaseInfo=true
-Durl=https://nexus.organisation.com/content/repositories/snapshots
-DrepositoryId=snapshots
-DgroupId=com.organisation.dept
-DartifactId=myproject
-Dversion=0.0.1-SNAPSHOT

cba is AFAIK not a valid packaging value, see "packaging":
https://maven.apache.org/pom.html
Maybe you are better off by zipping your script and deploy it with packaging "zip".

SonarQube 6.0 analysis fails on module without code

ENVIRONMENT
Jenkins 2.23
SonarQube plugin 2.4.4
SonarQube 6.0
Java plugin 4.2
Findbugs plugin 3.4.3
Clirr 1.3
(some other plugins, probably not relevant for this issue, but feel free to ask in the comments and I´ll edit the question)
I have a multi-module Maven project with one root module (pom packaging, no code) and several child modules (jar packaging, code). I´m running SonarQube analysis in a Maven job in Jenkins.
PROBLEM DESCRIPTION
Analysis worked ok in SQ 5.x. Since upgrading to SQ 6.0, the analysis fails:
the analysis on the child modules succeeds
the analysis on the root module fails with error:
[ERROR] Failed to execute goal
org.codehaus.mojo:sonar-maven-plugin:2.6:sonar (default-cli) on
project root:
org.sonar.plugins.java.api.JavaResourceLocator.findResourceByClassName(Ljava/lang/String;)Lorg/sonar/api/resources/Resource;
-> [Help 1]
ALREADY TRIED
excluding the root module from analysis --> results in Maven error
Unable to determine structure of project. Probably you use Maven
Advanced Reactor Options with a broken tree of modules. "foo" is
orphan
Findbugs plugin 3.4.4 from https://github.com/SonarQubeCommunity/sonar-findbugs/releases (as hinted in API incompatibility with SonarQube 5.6 and Java Analyzer 4.0 with Findbugs 3.3 or Cobertura 1.6.3) --> same error
DEBUG LOGGING
Maven with -e and -X
[ERROR] Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.6:sonar (default-cli) on project root: org.sonar.plugins.java.api.JavaResourceLocator.findResourceByClassName(Ljava/lang/String;)Lorg/sonar/api/resources/Resource; -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.6:sonar (default-cli) on project root: org.sonar.plugins.java.api.JavaResourceLocator.findResourceByClassName(Ljava/lang/String;)Lorg/sonar/api/resources/Resource;
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:212)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:307)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:193)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:106)
at org.jvnet.hudson.maven3.launcher.Maven32Launcher.main(Maven32Launcher.java:132)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:330)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:238)
at jenkins.maven3.agent.Maven32Main.launch(Maven32Main.java:186)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:136)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:71)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:332)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.maven.plugin.MojoExecutionException: org.sonar.plugins.java.api.JavaResourceLocator.findResourceByClassName(Ljava/lang/String;)Lorg/sonar/api/resources/Resource;
at org.codehaus.mojo.sonar.bootstrap.ExceptionHandling.handle(ExceptionHandling.java:41)
at org.codehaus.mojo.sonar.bootstrap.RunnerBootstraper.execute(RunnerBootstraper.java:139)
at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:132)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:207)
... 31 more
Caused by: java.lang.NoSuchMethodError: org.sonar.plugins.java.api.JavaResourceLocator.findResourceByClassName(Ljava/lang/String;)Lorg/sonar/api/resources/Resource;
at org.sonar.plugins.clirr.ClirrSensor.saveIssues(ClirrSensor.java:94)
at org.sonar.plugins.clirr.ClirrSensor.analyse(ClirrSensor.java:76)
at org.sonar.scanner.phases.SensorsExecutor.executeSensor(SensorsExecutor.java:57)
at org.sonar.scanner.phases.SensorsExecutor.execute(SensorsExecutor.java:49)
at org.sonar.scanner.phases.AbstractPhaseExecutor.execute(AbstractPhaseExecutor.java:78)
at org.sonar.scanner.scan.ModuleScanContainer.doAfterStart(ModuleScanContainer.java:184)
at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:142)
at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:127)
at org.sonar.scanner.scan.ProjectScanContainer.scan(ProjectScanContainer.java:241)
at org.sonar.scanner.scan.ProjectScanContainer.scanRecursively(ProjectScanContainer.java:236)
at org.sonar.scanner.scan.ProjectScanContainer.scanRecursively(ProjectScanContainer.java:234)
at org.sonar.scanner.scan.ProjectScanContainer.doAfterStart(ProjectScanContainer.java:226)
at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:142)
at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:127)
at org.sonar.scanner.task.ScanTask.execute(ScanTask.java:47)
at org.sonar.scanner.task.TaskContainer.doAfterStart(TaskContainer.java:86)
at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:142)
at org.sonar.core.platform.ComponentContainer.execute(ComponentContainer.java:127)
at org.sonar.scanner.bootstrap.GlobalContainer.executeTask(GlobalContainer.java:115)
at org.sonar.batch.bootstrapper.Batch.executeTask(Batch.java:118)
at org.sonar.batch.bootstrapper.Batch.execute(Batch.java:78)
at org.sonar.runner.batch.IsolatedLauncher.execute(IsolatedLauncher.java:48)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.sonar.runner.impl.BatchLauncher$1.delegateExecution(BatchLauncher.java:87)
at org.sonar.runner.impl.BatchLauncher$1.run(BatchLauncher.java:75)
at java.security.AccessController.doPrivileged(Native Method)
at org.sonar.runner.impl.BatchLauncher.doExecute(BatchLauncher.java:69)
at org.sonar.runner.impl.BatchLauncher.execute(BatchLauncher.java:50)
at org.sonar.runner.api.EmbeddedRunner.doExecute(EmbeddedRunner.java:102)
at org.sonar.runner.api.Runner.execute(Runner.java:100)
at org.codehaus.mojo.sonar.bootstrap.RunnerBootstraper.execute(RunnerBootstraper.java:135)
... 34 more
[ERROR]
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
QUESTION
Is this a configuration issue at my end? Or is there an issue with SonarQube or any of the plugins?
I will also accept answers that let me exclude the codeless root module as a workaround, without any interference for the child modules that have it as a parent.

The lines that might have raised your attention are the following ones:
Caused by: java.lang.NoSuchMethodError: org.sonar.plugins.java.api.JavaResourceLocator.findResourceByClassName(Ljava/lang/String;)Lorg/sonar/api/resources/Resource;
at org.sonar.plugins.clirr.ClirrSensor.saveIssues(ClirrSensor.java:94)
You must uninstall the Clirr plugin: it is not compatible with SonarQube 6.0.

To be honest, maybe this is not exactly the solution to your problem. But let me describe where I ran into a similar problem that matches your following description:
Unable to determine structure of project. Probably you use Maven Advanced Reactor Options with a broken tree of modules. "foo" is orphan.
I had changed my maven build to ci friendly as described by maven here.
Generally, my maven build was running fine until I added sonarqube check. Then I got the above-described message. It took a while to finde the problem and it was quite tricky.
By the way, I had a multiple module maven project running and the problem was that in my parent pom I was referring to the pom.xml instead of the folder.
<modules>
<module>modules/module1</module>
<!-- the reference to the pom.xml is the problem.
and will cause sonar to fail -->
<module>modules/module2/pom.xml</module>
</modules>

SonarQube 5.1 analysis fail with StackOverflowError

I recently upgraded to the newest SonarQube 5.1, but now, my maven builds have begun failing and I'm unable to determine what file is causing the error. The maven project is a multi module project.
SonarQube version 5.1
maven goal executed with "mvn sonar:sonar" (version 2.6 is used and the correctly analyses some of the projects)
The maven build finishes with the following error:
[ERROR] Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.6:sonar (default-cli) on project flex-parentpom: null: MojoExecutionException: StackOverflowError -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.6:sonar (default-cli) on project flex-parentpom: null
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:216)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:120)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:347)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:154)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:584)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:213)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:157)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: org.apache.maven.plugin.MojoExecutionException
at org.codehaus.mojo.sonar.bootstrap.ExceptionHandling.handle(ExceptionHandling.java:41)
at org.codehaus.mojo.sonar.bootstrap.RunnerBootstraper.execute(RunnerBootstraper.java:139)
at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:132)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:132)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
... 19 more
Caused by: java.lang.StackOverflowError
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.visitBinaryExpression(BaseTreeVisitor.java:208)
at org.sonar.java.model.expression.BinaryExpressionTreeImpl.accept(BinaryExpressionTreeImpl.java:85)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.scan(BaseTreeVisitor.java:42)
at org.sonar.java.resolve.SemanticModel$1.scan(SemanticModel.java:92)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.visitBinaryExpression(BaseTreeVisitor.java:208)
at org.sonar.java.model.expression.BinaryExpressionTreeImpl.accept(BinaryExpressionTreeImpl.java:85)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.scan(BaseTreeVisitor.java:42)
at org.sonar.java.resolve.SemanticModel$1.scan(SemanticModel.java:92)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.visitBinaryExpression(BaseTreeVisitor.java:208)
at org.sonar.java.model.expression.BinaryExpressionTreeImpl.accept(BinaryExpressionTreeImpl.java:85)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.scan(BaseTreeVisitor.java:42)
at org.sonar.java.resolve.SemanticModel$1.scan(SemanticModel.java:92)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.visitBinaryExpression(BaseTreeVisitor.java:208)
at org.sonar.java.model.expression.BinaryExpressionTreeImpl.accept(BinaryExpressionTreeImpl.java:85)
at org.sonar.plugins.java.api.tree.BaseTreeVisitor.scan(BaseTreeVisitor.java:42)
at org.sonar.java.resolve.SemanticModel$1.scan(SemanticModel.java:92)
Any ideas for debugging the cause of the error? I've attempted with -debug flag.

Problem solved.
I ended up setting up a local instance and running the maven plugin using a debugger, this allowed me to set a breakpoint at the exception. I turned out that we had a test case (file) which had a field defined by hundreds of Strings. This file has not been edited for a long time, so I guess the overall stack size has changed from 4.x to 5.x. The test was ugly and my solution in this case was therefore to refactor it. I guess another solution would be to increase the java stack size, but I've not tried it.

How to avoid nullpointer exception on compiling pl/java?

I'm trying to build pljava sources on Linux Mint 17 Qiana (32bit) with maven 3.2.5, JDK 1.7.0_72-b14, gpp is installed (2.24) and all modules are compiled fine except one: pl/java server side library.
The stacktrace is:
[ERROR] Failed to execute goal com.github.maven-nar:nar-maven-plugin:3.1.0:nar-compile (default-nar-compile) on project pljava-so: Execution default-nar-compile of goal com.github.maven-nar:nar-maven-plugin:3.1.0:nar-compile failed. NullPointerException -> [Help 1]org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal com.github.maven-nar:nar-maven-plugin:3.1.0:nar-compile (default-nar-compile) on project pljava-so: Execution default-nar-compile of goal com.github.maven-nar:nar-maven-plugin:3.1.0:nar-compile failed.
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:224)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:120)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:355)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:155)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:584)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:216)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:160)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)Caused by: org.apache.maven.plugin.PluginExecutionException: Execution default-nar-compile of goal com.github.maven-nar:nar-maven-plugin:3.1.0:nar-compile failed.
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:143)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
... 19 moreCaused by: java.lang.NullPointerException
at com.github.maven_nar.cpptasks.gcc.GppLinker.isClang(GppLinker.java:317)
at com.github.maven_nar.cpptasks.gcc.GppLinker.addImpliedArgs(GppLinker.java:159)
at com.github.maven_nar.cpptasks.compiler.CommandLineLinker.createConfiguration(CommandLineLinker.java:153)
at com.github.maven_nar.cpptasks.compiler.AbstractLinker.createConfiguration(AbstractLinker.java:83)
at com.github.maven_nar.cpptasks.ProcessorDef.createConfiguration(ProcessorDef.java:200)
at com.github.maven_nar.cpptasks.CCTask.collectExplicitObjectFiles(CCTask.java:500)
at com.github.maven_nar.cpptasks.CCTask.execute(CCTask.java:647)
at com.github.maven_nar.NarCompileMojo.createLibrary(NarCompileMojo.java:433)
at com.github.maven_nar.NarCompileMojo.narExecute(NarCompileMojo.java:107)
at com.github.maven_nar.AbstractNarMojo.execute(AbstractNarMojo.java:329)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:132)
... 20 more[ERROR][ERROR] Re-run Maven using the -X switch to enable full debug logging.[ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles:
How can I fix this?

In my case (Debian) this problem has been solved by installing the g++ package.
I have found this workaround here.
Quote:
I tracked the problem in GppLinker.isClang which is trying to invoke "g++ --version". Since this is a new VM, I was still in the process of determining what needed to be installed. In this case, I hadn't yet installed the gcc-c++ package to get g++.
Note: The sources I was compiling have been checked out at 2015-04-01.

Eclipse equivalent of mvn tomcat6:run?

I have created tomcat project by Eclipse means. I selected tomcat archetype at archetype selection stage. It crated 6 directories for a project, including "-api", "-api-impl" and etc.
Now how can I run something?
At the command line I can issue
mvn tomcat6:run
or
mvn tomcat7:run
and it will run.
How to do the same from within eclipse?
UPDATE
Probably this command is equivalent to ->Debug As... and entering "tomcat6:run" into "goals". But in this case I get errors like
Downloading: http://repo.maven.apache.org/maven2/org/apache/tomcat/maven/tomcat6-maven-plugin/2.1/tomcat6-maven-plugin-2.1.pom
[WARNING] Failed to retrieve plugin descriptor for org.apache.tomcat.maven:tomcat6-maven-plugin:2.1: Plugin org.apache.tomcat.maven:tomcat6-maven-plugin:2.1 or one of its dependencies could not be resolved: Failed to read artifact descriptor for org.apache.tomcat.maven:tomcat6-maven-plugin:jar:2.1
UPDATE 2
If I set debug output, I get "connection refused" exceptions:
[DEBUG] Resolving plugin prefix tomcat6 from [org.apache.maven.plugins, org.codehaus.mojo]
[DEBUG] Using connector WagonRepositoryConnector with priority 0 for http://repo.maven.apache.org/maven2
Downloading: http://repo.maven.apache.org/maven2/org/apache/tomcat/maven/tomcat6-maven-plugin/2.1/tomcat6-maven-plugin-2.1.pom
[DEBUG] Writing resolution tracking file D:\Users\Dims\Design\!Lib\!m2\repository\org\apache\tomcat\maven\tomcat6-maven-plugin\2.1\tomcat6-maven-plugin-2.1.pom.lastUpdated
[WARNING] Failed to retrieve plugin descriptor for org.apache.tomcat.maven:tomcat6-maven-plugin:2.1: Plugin org.apache.tomcat.maven:tomcat6-maven-plugin:2.1 or one of its dependencies could not be resolved: Failed to read artifact descriptor for org.apache.tomcat.maven:tomcat6-maven-plugin:jar:2.1
org.apache.maven.plugin.PluginResolutionException: Plugin org.apache.tomcat.maven:tomcat6-maven-plugin:2.1 or one of its dependencies could not be resolved: Failed to read artifact descriptor for org.apache.tomcat.maven:tomcat6-maven-plugin:jar:2.1
at org.apache.maven.plugin.internal.DefaultPluginDependenciesResolver.resolve(DefaultPluginDependenciesResolver.java:129)
at org.apache.maven.plugin.internal.DefaultMavenPluginManager.getPluginDescriptor(DefaultMavenPluginManager.java:142)
at org.apache.maven.plugin.DefaultBuildPluginManager.loadPlugin(DefaultBuildPluginManager.java:59)
at org.apache.maven.plugin.prefix.internal.DefaultPluginPrefixResolver.resolveFromProject(DefaultPluginPrefixResolver.java:139)
at org.apache.maven.plugin.prefix.internal.DefaultPluginPrefixResolver.resolveFromProject(DefaultPluginPrefixResolver.java:122)
at org.apache.maven.plugin.prefix.internal.DefaultPluginPrefixResolver.resolve(DefaultPluginPrefixResolver.java:86)
at org.apache.maven.lifecycle.internal.MojoDescriptorCreator.findPluginForPrefix(MojoDescriptorCreator.java:262)
at org.apache.maven.lifecycle.internal.MojoDescriptorCreator.getMojoDescriptor(MojoDescriptorCreator.java:222)
at org.apache.maven.lifecycle.internal.DefaultLifecycleTaskSegmentCalculator.calculateTaskSegments(DefaultLifecycleTaskSegmentCalculator.java:106)
at org.apache.maven.lifecycle.internal.DefaultLifecycleTaskSegmentCalculator.calculateTaskSegments(DefaultLifecycleTaskSegmentCalculator.java:86)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:98)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
Caused by: org.sonatype.aether.resolution.ArtifactDescriptorException: Failed to read artifact descriptor for org.apache.tomcat.maven:tomcat6-maven-plugin:jar:2.1
at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:296)
at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor(DefaultArtifactDescriptorReader.java:186)
at org.sonatype.aether.impl.internal.DefaultRepositorySystem.readArtifactDescriptor(DefaultRepositorySystem.java:279)
at org.apache.maven.plugin.internal.DefaultPluginDependenciesResolver.resolve(DefaultPluginDependenciesResolver.java:115)
... 23 more
Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not transfer artifact org.apache.tomcat.maven:tomcat6-maven-plugin:pom:2.1 from/to central (http://repo.maven.apache.org/maven2): Connection to http://repo.maven.apache.org refused
at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:538)
at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:216)
at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:193)
at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:281)
... 26 more
Caused by: org.sonatype.aether.transfer.ArtifactTransferException: Could not transfer artifact org.apache.tomcat.maven:tomcat6-maven-plugin:pom:2.1 from/to central (http://repo.maven.apache.org/maven2): Connection to http://repo.maven.apache.org refused
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:951)
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:941)
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:669)
at org.sonatype.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:60)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
Caused by: org.apache.maven.wagon.TransferFailedException: Connection to http://repo.maven.apache.org refused
at org.apache.maven.wagon.shared.http4.AbstractHttpClientWagon.fillInputData(AbstractHttpClientWagon.java:799)
at org.apache.maven.wagon.StreamWagon.getInputStream(StreamWagon.java:116)
at org.apache.maven.wagon.StreamWagon.getIfNewer(StreamWagon.java:88)
at org.apache.maven.wagon.StreamWagon.get(StreamWagon.java:61)
at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:601)
... 4 more
Caused by: org.apache.maven.wagon.providers.http.httpclient.conn.HttpHostConnectException: Connection to http://repo.maven.apache.org refused
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:158)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.AbstractPoolEntry.open(AbstractPoolEntry.java:149)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.AbstractPooledConnAdapter.open(AbstractPooledConnAdapter.java:121)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:573)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:425)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:820)
at org.apache.maven.wagon.providers.http.httpclient.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:754)
at org.apache.maven.wagon.shared.http4.AbstractHttpClientWagon.execute(AbstractHttpClientWagon.java:674)
at org.apache.maven.wagon.shared.http4.AbstractHttpClientWagon.fillInputData(AbstractHttpClientWagon.java:793)
... 8 more
Caused by: java.net.ConnectException: connect: Address is invalid on local machine, or port is not valid on remote machine
at java.net.DualStackPlainSocketImpl.connect0(Native Method)
at java.net.DualStackPlainSocketImpl.socketConnect(DualStackPlainSocketImpl.java:69)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:337)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:198)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:180)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:157)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:391)
at java.net.Socket.connect(Socket.java:579)
at org.apache.maven.wagon.providers.http.httpclient.conn.scheme.PlainSocketFactory.connectSocket(PlainSocketFactory.java:123)
at org.apache.maven.wagon.providers.http.httpclient.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:148)
... 16 more
SOLUTION
Antivirus' firewall was preventing eclipse from accessing web. So, running goal from within eclipse was failing.

This tutorial should help you set up Tomcat with Eclipse. However above commands are Maven. There is Maven plugin for Eclipse but there are number of complains. So if Tomcat on Eclipse on your mind use first link, if Maven is priority get the plugin