The fastest way to populate a In Memory Data Grid Hazelcast - java

What is the fastest way to populate a Hazelcast Data Grid. Reading through documentation I can see couple of variants:
Use multithreading and IMap.set
Use multithreading and IMap.putAll
Use a Distributed Execution in order to start populating the grid from all participants.
My performance benchmark shows that IMap.putAll is faster than IMap.Set. But it is stated in the Hazelcasty Documentation that IMap.putAll does not come with guarantees that everything will be inserted atomically.
Can someone clarify a little bit about what would be the fastest way to populate a data grid with data ?
Is variant number 3 good ?

I would see the same three options. Anyhow as you mentioned, option two does not guarantee that everything was put into the map atomically but if you just load data and wait for all threads to finish loading data using IMap::putAll you should be fine.
Apart from that IMap::set would be the alternative. In any case you want to multithread the loading process. I would play around a bit with different thread numbers and loading data from a client is normally recommended to keep nodes free for storage operations.
I personally never benchmarked your third option, anyhow it would be possible as well. Just not sure it is worth the additional work.
How much data do you want to load that you're concerned it could be slow? Do you already know that loading is slow? Do you use Java Serialization (this is a huge performance killer)? Do you use indexes (those have to be generated while putting data)?
There's normally a lot of optimizations to apply to speed up, not only, data loading but also normal operation.

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Best way to store small, alternating, public data that updates every couple of hours?

The essence of my problem is that there are too many solutions, and I would like to find which one wins out in pros and cons before I build an infrastructure around it.
(Simplified for the purpose of this forum) This is an auction site where five auctions are stored in a rank #1-5, #1 being the currently featured auction. The other four are simply "on deck." After either a couple hours or the completion of that auction, #2-5 move up to #1-4 and a new one is chosen to be #5
I'm using a dedicated server and I've been considering just storing the data in the servlet or maybe adding a column in the database as a boolean for each auction...like "isFeatured = 1"
Suffice it to say the data is read about 5 times+ more often than it is written, which is why I'm leaning towards good old SQL.
When you can retrieve the relevant auctions from DB with a simple query with ORDER BY and TOP or something similar then try this. If no performance issues occur then KISS and you're done.
Otherwise when these 5 auctions are valid for a while then cache them in memory. Have a singleton holding these auctions and provide methods for updating for example. Maybe you want to use a caching lib instead. Update these Top5 whenever necessary but serve them directly out of memory without hiting a DB or something similar expensive.
What kind of scale are you looking for? How many application servers need access to the data?
I think you're probably making this more complicated than it is. Just use a database, take a hit of ACID, and move onto whatever else you need to work on. :P
Have you taken a look at SQLite? It allows for "good old SQL" without all of the hassles of setting up a separate database server. As long as the data isn't too huge (to be fair, I haven't tested the size limits, but I've skimmed blog entries mentioning the use of SQLite to process files of several dozen MB in size quickly and with no problems), you should be fine.
It isn't a perfect solution for all needs (frankly, I sometimes find the dynamic typing to be a pain), but since it relies on locally stored files, reads will be much faster than firing up a network connection to talk to a more "traditional" RDBMS.

Transferring large arrays from server to client in GWT

I'm attempting to transfer a large two dimensional array (17955 X 3) from my server to the client using Asynchronous RPC calls. This is taking a very long period of time which is especially bad because the data is needed in order to initialize the application. I've read that using a JSON object might be faster, but I'm not sure how to do the conversion in Java as I'm pretty new to the language and GWT, and I don't know if the speed difference is significant. I also read somewhere that I can zip the data, but I only read that in a forum and I'm not sure if it's actually possible as I couldn't find information for it elsewhere. Is there any way to transfer large amounts of data from server to client? Thanks for your time.
Read this article on adding JSON capabilities to GWT. In regards to compression this article explains gzipping with GWT.
Also the size of your array is still very large even with the compression you may achieve with gzipping, which will vary depending on how much data is repeated in your array. You may want to consider logically breaking up the array in multiple RPC calls if at all possible.
I would recommend revisiting your design if your application needs such a large amount of data to initialize.
As other's pointed out, you should re-consider your design because even if you are able to solve the data transfer speed issue somehow you will likely find other issues waiting for you:
Processing large amount of data in the browser can be slow.
Lot of data means a lot of used-up memory
What you can think about is:
Partitioning the data:
How is your user going to cope with a lot of data. Your user will probably need some kind of user interface aid to be able to work with such a huge data. If you are going to use paging, tabs or other means to partition the data for user's consumption, why not load the data on demand. For example, you can load a single page of records if you are using a paging grid or you can load a single tab worth of records if you are going to use tabs. Similary, if you are going to allow filtering on the records, you can set a default filter after the load to keep the data to a minumum.
Summarizing the data:
You can also summarize the data on the server, if you are not going to show each row to the user. For example you can initially show summary for each group of records and let the user drill-down in a specific group

Bitcask ok for simple and high performant file store?

I am looking for a simple way to store and retrieve millions of xml files. Currently everything is done in a filesystem, which has some performance issues.
Our requirements are:
Ability to store millions of xml-files in a batch-process. XML files may be up to a few megs large, most in the 100KB-range.
Very fast random lookup by id (e.g. document URL)
Accessible by both Java and Perl
Available on the most important Linux-Distros and Windows
I did have a look at several NoSQL-Platforms (e.g. CouchDB, Riak and others), and while those systems look great, they seem almost like beeing overkill:
No clustering required
No daemon ("service") required
No clever search functionality required
Having delved deeper into Riak, I have found Bitcask (see intro), which seems like exactly what I want. The basics described in the intro are really intriguing. But unfortunately there is no means to access a bitcask repo via java (or is there?)
Soo my question boils down to
is the following assumption right: the Bitcask model (append-only writes, in-memory key management) is the right way to store/retrieve millions of documents
are there any viable alternatives to Bitcask available via Java? (BerkleyDB comes to mind...)
(for riak specialists) Is Riak much overhead implementation/management/resource wise compared to "naked" Bitcask?
I don't think that Bitcask is going to work well for your use-case. It looks like the Bitcask model is designed for use-cases where the size of each value is relatively small.
The problem is in Bitcask's data file merging process. This involves copying all of the live values from a number of "older data file" into the "merged data file". If you've got millions of values in the region of 100Kb each, this is an insane amount of data copying.
Note the above assumes that the XML documents are updated relatively frequently. If updates are rare and / or you can cope with a significant amount of space "waste", then merging may only need to be done rarely, or not at all.
Bitcask can be appropriate for this case (large values) depending on whether or not there is a great deal of overwriting. In particular, there is not reason to merge files unless there is a great deal of wasted space, which only occurs when new values arrive with the same key as old values.
Bitcask is particularly good for this batch load case as it will sequentially write the incoming data stream straight to disk. Lookups will take one seek in most cases, although the file cache will help you if there is any temporal locality.
I am not sure on the status of a Java version/wrapper.

how to handle large lists of data

We have a part of an application where, say, 20% of the time it needs to read in a huge amount of data that exceeds memory limits. While we can increase memory limits, we hesitate to do so to since it requires having a high allocation when most times it's not necessary.
We are considering using a customized java.util.List implementation to spool to disk when we hit peak loads like this, but under lighter circumstances will remain in memory.
The data is loaded once into the collection, subsequently iterated over and processed, and then thrown away. It doesn't need to be sorted once it's in the collection.
Does anyone have pros/cons regarding such an approach?
Is there an open source product that provides some sort of List impl like this?
Thanks!
Updates:
Not to be cheeky, but by 'huge' I mean exceeding the amount of memory we're willing to allocate without interfering with other processes on the same hardware. What other details do you need?
The application is, essentially a batch processor that loads in data from multiple database tables and conducts extensive business logic on it. All of the data in the list is required since aggregate operations are part of the logic done.
I just came across this post which offers a very good option: STXXL equivalent in Java
Do you really need to use a List? Write an implementation of Iterator (it may help to extend AbstractIterator) that steps through your data instead. Then you can make use of helpful utilities like these with that iterator. None of this will cause huge amounts of data to be loaded eagerly into memory -- instead, records are read from your source only as the iterator is advanced.
If you're working with huge amounts of data, you might want to consider using a database instead.
Back it up to a database and do lazy loading on the items.
An ORM framework may be in order. It depends on your usage. It may be pretty straight forward, or the worst of your nightmares it is hard to tell from what you've described.
I'm optimist and I think that using a ORM framework ( such as Hibernate ) would solve your problem in about 3 - 5 days
Is there sorting/processing that's going on while the data is being read into the collection? Where is it being read from?
If it's being read from disk already, would it be possible to simply batch-process it directly from disk, instead of reading it into a list completely and then iterating? How inter-dependent is the data?
I would also question why you need to load all of the data in memory to process it. Typically, you should be able to do the processing as it is being loaded and then use the result. That would keep the actual data out of memory.

Java: Advice on handling large data volumes. (Part Deux)

Alright. So I have a very large amount of binary data (let's say, 10GB) distributed over a bunch of files (let's say, 5000) of varying lengths.
I am writing a Java application to process this data, and I wish to institute a good design for the data access. Typically what will happen is such:
One way or another, all the data will be read during the course of processing.
Each file is (typically) read sequentially, requiring only a few kilobytes at a time. However, it is often necessary to have, say, the first few kilobytes of each file simultaneously, or the middle few kilobytes of each file simultaneously, etc.
There are times when the application will want random access to a byte or two here and there.
Currently I am using the RandomAccessFile class to read into byte buffers (and ByteBuffers). My ultimate goal is to encapsulate the data access into some class such that it is fast and I never have to worry about it again. The basic functionality is that I will be asking it to read frames of data from specified files, and I wish to minimize the I/O operations given the considerations above.
Examples for typical access:
Give me the first 10 kilobytes of all my files!
Give me byte 0 through 999 of file F, then give me byte 1 through 1000, then give me 2 through 1001, etc, etc, ...
Give me a megabyte of data from file F starting at such and such byte!
Any suggestions for a good design?
Use Java NIO and MappedByteBuffers, and treat your files as a list of byte arrays. Then, let the OS worry about the details of caching, read, flushing etc.
#Will
Pretty good results. Reading a large binary file quick comparison:
Test 1 - Basic sequential read with RandomAccessFile.
2656 ms
Test 2 - Basic sequential read with buffering.
47 ms
Test 3 - Basic sequential read with MappedByteBuffers and further frame buffering optimization.
16 ms
Wow. You are basically implementing a database from scratch. Is there any possibility of importing the data into an actual RDBMS and just using SQL?
If you do it yourself you will eventually want to implement some sort of caching mechanism, so the data you need comes out of RAM if it is there, and you are reading and writing the files in a lower layer.
Of course, this also entails a lot of complex transactional logic to make sure your data stays consistent.
I was going to suggest that you follow up on Eric's database idea and learn how databases manage their buffers—effectively implementing their own virtual memory management.
But as I thought about it more, I concluded that most operating systems are already a better job of implementing file system caching than you can likely do without low-level access in Java.
There is one lesson from database buffer management that you might consider, though. Databases use an understanding of the query plan to optimize the management strategy.
In a relational database, it's often best to evict the most-recently-used block from the cache. For example, a "young" block holding a child record in a join won't be looked at again, while the block containing its parent record is still in use even though it's "older".
Operating system file caches, on the other hand, are optimized to reuse recently used data (and reading ahead of the most recently used data). If your application doesn't fit that pattern, it may be worth managing the cache yourself.
You may want to take a look at an open source, simple object database called jdbm - it has a lot of this kind of thing developed, including ACID capabilities.
I've done a number of contributions to the project, and it would be worth a review of the source code if nothing else to see how we solved many of the same problems you might be working on.
Now, if your data files are not under your control (i.e. you are parsing text files generated by someone else, etc...) then the page-structured type of storage that jdbm uses may not be appropriate for you - but if all of these files are files that you are creating and working with, it may be worth a look.
#Eric
But my queries are going to be much, much simpler than anything I can do with SQL. And wouldn't a database access be much more expensive than a binary data read?
This is to answer the part about minimizing I/O traffic. On the Java side, all you can really do is wrap your readers in BufferedReaders. Aside from that, your operating system will handle other optimizations like keeping recently-read data in the page cache and doing read-ahead on files to speed up sequential reads. There's no point in doing additional buffering in Java (although you'll still need a byte buffer to return the data to the client).
I had someone recommend hadoop (http://hadoop.apache.org) to me just the other day. It looks like it could be pretty nice, and might have some marketplace traction.
I would step back and ask yourself why you are using files as your system of record, and what gains that gives you over using a database. A database certainly gives you the ability to structure your data. Given the SQL standard, it might be more maintainable in the long run.
On the other hand, your file data may not be structured so easily within the constraints of a database. The largest search company in the world :) doesn't use a database for their business processing. See here and here.

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