Using redisTemplate, things work until redis server restart. Then two exceptions occur (see below).
When I stop using redisTemplate.executePipelined, the exception 2 stops happening. After invoking redisTemplate.setEnableTransactionSupport(false);, the exception 1 goes away.
But I have no idea why.
Any ideas?
Exception 1:
org.springframework.data.redis.RedisConnectionFailureException: java.net.SocketException: Broken pipe; nested exception is redis.clients.jedis.ex
ceptions.JedisConnectionException: java.net.SocketException: Broken pipe
at org.springframework.data.redis.connection.jedis.JedisExceptionConverter.convert(JedisExceptionConverter.java:67)
at org.springframework.data.redis.connection.jedis.JedisExceptionConverter.convert(JedisExceptionConverter.java:41)
at org.springframework.data.redis.PassThroughExceptionTranslationStrategy.translate(PassThroughExceptionTranslationStrategy.java:37)
at org.springframework.data.redis.FallbackExceptionTranslationStrategy.translate(FallbackExceptionTranslationStrategy.java:37)
at org.springframework.data.redis.connection.jedis.JedisConnection.convertJedisAccessException(JedisConnection.java:212)
at org.springframework.data.redis.connection.jedis.JedisConnection.hGetAll(JedisConnection.java:2890)
at org.springframework.data.redis.connection.DefaultStringRedisConnection.hGetAll(DefaultStringRedisConnection.java:360)
at org.springframework.data.redis.core.DefaultHashOperations$13.doInRedis(DefaultHashOperations.java:223)
at org.springframework.data.redis.core.DefaultHashOperations$13.doInRedis(DefaultHashOperations.java:220)
at org.springframework.data.redis.core.RedisTemplate.execute(RedisTemplate.java:204)
at org.springframework.data.redis.core.RedisTemplate.execute(RedisTemplate.java:166)
at org.springframework.data.redis.core.AbstractOperations.execute(AbstractOperations.java:88)
at org.springframework.data.redis.core.DefaultHashOperations.entries(DefaultHashOperations.java:220)
....
Caused by: redis.clients.jedis.exceptions.JedisConnectionException: java.net.SocketException: Broken pipe
at redis.clients.jedis.Protocol.sendCommand(Protocol.java:104)
at redis.clients.jedis.Protocol.sendCommand(Protocol.java:84)
at redis.clients.jedis.Connection.sendCommand(Connection.java:127)
at redis.clients.jedis.BinaryClient.hgetAll(BinaryClient.java:294)
at redis.clients.jedis.BinaryJedis.hgetAll(BinaryJedis.java:1027)
at org.springframework.data.redis.connection.jedis.JedisConnection.hGetAll(JedisConnection.java:2888)
... 14 common frames omitted
Caused by: java.net.SocketException: Broken pipe
at java.net.SocketOutputStream.socketWrite0(Native Method)
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:109)
at java.net.SocketOutputStream.write(SocketOutputStream.java:153)
at redis.clients.util.RedisOutputStream.flushBuffer(RedisOutputStream.java:52)
at redis.clients.util.RedisOutputStream.write(RedisOutputStream.java:59)
at redis.clients.jedis.Protocol.sendCommand(Protocol.java:90)
... 19 common frames omitted
Exception 2:
org.springframework.dao.InvalidDataAccessApiUsageException: Cannot use Jedis when in Pipeline. Please use Pipeline or reset jedis state .; nested
exception is redis.clients.jedis.exceptions.JedisDataException: Cannot use Jedis when in Pipeline. Please use Pipeline or reset jedis state .
at org.springframework.data.redis.connection.jedis.JedisExceptionConverter.convert(JedisExceptionConverter.java:64)
at org.springframework.data.redis.connection.jedis.JedisExceptionConverter.convert(JedisExceptionConverter.java:41)
at org.springframework.data.redis.PassThroughExceptionTranslationStrategy.translate(PassThroughExceptionTranslationStrategy.java:37)
at org.springframework.data.redis.FallbackExceptionTranslationStrategy.translate(FallbackExceptionTranslationStrategy.java:37)
at org.springframework.data.redis.connection.jedis.JedisConnection.convertJedisAccessException(JedisConnection.java:212)
at org.springframework.data.redis.connection.jedis.JedisConnection.hGetAll(JedisConnection.java:2890)
at org.springframework.data.redis.connection.DefaultStringRedisConnection.hGetAll(DefaultStringRedisConnection.java:360)
at org.springframework.data.redis.core.DefaultHashOperations$13.doInRedis(DefaultHashOperations.java:223)
at org.springframework.data.redis.core.DefaultHashOperations$13.doInRedis(DefaultHashOperations.java:220)
at org.springframework.data.redis.core.RedisTemplate.execute(RedisTemplate.java:204)
at org.springframework.data.redis.core.RedisTemplate.execute(RedisTemplate.java:166)
at org.springframework.data.redis.core.AbstractOperations.execute(AbstractOperations.java:88)
at org.springframework.data.redis.core.DefaultHashOperations.entries(DefaultHashOperations.java:220)
...
Caused by: redis.clients.jedis.exceptions.JedisDataException: Cannot use Jedis when in Pipeline. Please use Pipeline or reset jedis state .
at redis.clients.jedis.BinaryJedis.checkIsInMultiOrPipeline(BinaryJedis.java:1761)
at redis.clients.jedis.BinaryJedis.hgetAll(BinaryJedis.java:1026)
at org.springframework.data.redis.connection.jedis.JedisConnection.hGetAll(JedisConnection.java:2888)
... 14 common frames omitted
Related
I installed a new subversion repository but I am unable to connect to the repository.
In the old repository it is working as expected. The new repository thorws an exception:
org.eclipse.team.svn.core.connector.SVNConnectorException: svn: E210002: There was a problem while connecting to xn--x7h.example.com:22
at org.polarion.team.svn.connector.svnkit.SVNKitService.handleClientException(SVNKitService.java:59)
at org.polarion.team.svn.connector.svnkit.SVNKitConnector.listEntries(SVNKitConnector.java:1758)
at org.eclipse.team.svn.core.extension.factory.ThreadNameModifier.listEntries(ThreadNameModifier.java:324)
at org.eclipse.team.svn.core.utility.SVNUtility.list(SVNUtility.java:440)
at org.eclipse.team.svn.core.svnstorage.SVNRepositoryContainer.getChildren(SVNRepositoryContainer.java:79)
at org.eclipse.team.svn.core.operation.remote.GetRemoteFolderChildrenOperation.runImpl(GetRemoteFolderChildrenOperation.java:76)
at org.eclipse.team.svn.core.operation.AbstractActionOperation.run(AbstractActionOperation.java:82)
at org.eclipse.team.svn.core.utility.ProgressMonitorUtility.doTask(ProgressMonitorUtility.java:104)
at org.eclipse.team.svn.core.operation.CompositeOperation.runImpl(CompositeOperation.java:99)
at org.eclipse.team.svn.core.operation.AbstractActionOperation.run(AbstractActionOperation.java:82)
at org.eclipse.team.svn.core.operation.LoggedOperation.run(LoggedOperation.java:40)
at org.eclipse.team.svn.core.utility.ProgressMonitorUtility.doTask(ProgressMonitorUtility.java:104)
at org.eclipse.team.svn.core.utility.ProgressMonitorUtility.doTaskExternal(ProgressMonitorUtility.java:90)
at org.eclipse.team.svn.ui.utility.DefaultCancellableOperationWrapper.run(DefaultCancellableOperationWrapper.java:55)
at org.eclipse.team.svn.ui.utility.ScheduledOperationWrapper.run(ScheduledOperationWrapper.java:37)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)
Caused by: org.apache.subversion.javahl.ClientException: svn: E210002: There was a problem while connecting to xn--x7h.example.com:22
at org.apache.subversion.javahl.ClientException.fromException(ClientException.java:117)
at org.tmatesoft.svn.core.javahl17.SVNClientImpl.getClientException(SVNClientImpl.java:1539)
at org.tmatesoft.svn.core.javahl17.SVNClientImpl.list(SVNClientImpl.java:189)
at org.polarion.team.svn.connector.svnkit.SVNKitConnector.listEntries(SVNKitConnector.java:1745)
... 14 more
Caused by: org.tmatesoft.svn.core.SVNException: svn: E210002: There was a problem while connecting to xn--x7h.example.com:22
at org.tmatesoft.svn.core.internal.wc.SVNErrorManager.error(SVNErrorManager.java:70)
at org.tmatesoft.svn.core.internal.wc.SVNErrorManager.error(SVNErrorManager.java:57)
at org.tmatesoft.svn.core.internal.io.svn.SVNSSHConnector.open(SVNSSHConnector.java:145)
at org.tmatesoft.svn.core.internal.io.svn.SVNConnection.open(SVNConnection.java:77)
at org.tmatesoft.svn.core.internal.io.svn.SVNRepositoryImpl.openConnection(SVNRepositoryImpl.java:1273)
at org.tmatesoft.svn.core.internal.io.svn.SVNRepositoryImpl.getLatestRevision(SVNRepositoryImpl.java:172)
at org.tmatesoft.svn.core.internal.wc2.ng.SvnNgRepositoryAccess.getRevisionNumber(SvnNgRepositoryAccess.java:119)
at org.tmatesoft.svn.core.internal.wc2.SvnRepositoryAccess.getLocations(SvnRepositoryAccess.java:195)
at org.tmatesoft.svn.core.internal.wc2.ng.SvnNgRepositoryAccess.createRepositoryFor(SvnNgRepositoryAccess.java:46)
at org.tmatesoft.svn.core.internal.wc2.remote.SvnRemoteList.run(SvnRemoteList.java:36)
at org.tmatesoft.svn.core.internal.wc2.remote.SvnRemoteList.run(SvnRemoteList.java:1)
at org.tmatesoft.svn.core.internal.wc2.SvnOperationRunner.run(SvnOperationRunner.java:21)
at org.tmatesoft.svn.core.wc2.SvnOperationFactory.run(SvnOperationFactory.java:1235)
at org.tmatesoft.svn.core.wc2.SvnOperation.run(SvnOperation.java:294)
at org.tmatesoft.svn.core.javahl17.SVNClientImpl.list(SVNClientImpl.java:187)
... 15 more
Caused by: java.io.IOException: There was a problem while connecting to xn--x7h.example.com:22
at com.trilead.ssh2.Connection.connect(Connection.java:817)
at org.tmatesoft.svn.core.internal.io.svn.ssh.SshHost.openConnection(SshHost.java:225)
at org.tmatesoft.svn.core.internal.io.svn.ssh.SshHost.openSession(SshHost.java:153)
at org.tmatesoft.svn.core.internal.io.svn.ssh.SshSessionPool.openSession(SshSessionPool.java:85)
at org.tmatesoft.svn.core.internal.io.svn.SVNSSHConnector.open(SVNSSHConnector.java:122)
... 27 more
Caused by: java.io.IOException: Key exchange was not finished, connection is closed.
at com.trilead.ssh2.transport.KexManager.getOrWaitForConnectionInfo(KexManager.java:92)
at com.trilead.ssh2.transport.TransportManager.getConnectionInfo(TransportManager.java:231)
at com.trilead.ssh2.Connection.connect(Connection.java:769)
... 31 more
Caused by: java.io.IOException: Cannot negotiate, proposals do not match.
at com.trilead.ssh2.transport.KexManager.handleMessage(KexManager.java:413)
at com.trilead.ssh2.transport.TransportManager.receiveLoop(TransportManager.java:765)
at com.trilead.ssh2.transport.TransportManager$1.run(TransportManager.java:480)
at java.base/java.lang.Thread.run(Thread.java:834)
Any ideas?
I checked on server-side what is going on. So I called tail -f /var/log/auth.log and discovered a message that the client and the server was not able to agree on matching kex-algorithms.
Finally my solution was to enable the line
KexAlgorithms +diffie-hellman-group1-sha1
to the corresponding
/etc/ssh/sshd_config
File and restart the sshd-server.
im trying to run one of the examples coming with the OPC-UA Java Stack and getting the following Exception.
Exception in thread "main" org.opcfoundation.ua.common.RuntimeServiceResultException: org.opcfoundation.ua.common.ServiceResultException: Bad_CertificateInvalid (code=0x80120000, description="2148663296, java.io.IOException: Duplicate extensions not allowed")
at org.opcfoundation.ua.transport.TransportChannelSettings.getServerCertificate(TransportChannelSettings.java:114)
at org.opcfoundation.ua.transport.tcp.io.TcpConnection.initialize(TcpConnection.java:376)
at org.opcfoundation.ua.transport.tcp.io.SecureChannelTcp.initialize(SecureChannelTcp.java:273)
at org.opcfoundation.ua.transport.tcp.io.SecureChannelTcp.initialize(SecureChannelTcp.java:246)
at org.opcfoundation.ua.application.Client.createSecureChannel(Client.java:640)
at org.opcfoundation.ua.application.Client.createSecureChannel(Client.java:555)
at org.opcfoundation.ua.application.Client.createSessionChannel(Client.java:370)
at org.opcfoundation.ua.application.Client.createSessionChannel(Client.java:345)
at org.opcfoundation.ua.examples.SampleClient.main(SampleClient.java:109)
Caused by: org.opcfoundation.ua.common.ServiceResultException: Bad_CertificateInvalid (code=0x80120000, description="2148663296, java.io.IOException: Duplicate extensions not allowed")
at org.opcfoundation.ua.transport.security.Cert.<init>(Cert.java:143)
at org.opcfoundation.ua.transport.TransportChannelSettings.getServerCertificate(TransportChannelSettings.java:112)
... 8 more
Caused by: java.security.cert.CertificateParsingException: java.io.IOException: Duplicate extensions not allowed
at sun.security.x509.X509CertInfo.<init>(X509CertInfo.java:169)
at sun.security.x509.X509CertImpl.parse(X509CertImpl.java:1804)
at sun.security.x509.X509CertImpl.<init>(X509CertImpl.java:195)
at sun.security.provider.X509Factory.engineGenerateCertificate(X509Factory.java:102)
at java.security.cert.CertificateFactory.generateCertificate(CertificateFactory.java:339)
at org.opcfoundation.ua.utils.CertificateUtils.decodeX509Certificate(CertificateUtils.java:193)
at org.opcfoundation.ua.transport.security.Cert.<init>(Cert.java:136)
... 9 more
Caused by: java.io.IOException: Duplicate extensions not allowed
at sun.security.x509.CertificateExtensions.parseExtension(CertificateExtensions.java:115)
at sun.security.x509.CertificateExtensions.init(CertificateExtensions.java:88)
at sun.security.x509.CertificateExtensions.<init>(CertificateExtensions.java:78)
at sun.security.x509.X509CertInfo.parse(X509CertInfo.java:702)
at sun.security.x509.X509CertInfo.<init>(X509CertInfo.java:167)
... 15 more
I tried running another client (c#) and it works.
I'm the new to redis, I start the server about this tutorial. And it work. Then I use write the code using java to connect redis, then it's ok, like this:
Jedis jedis = new Jedis("localhost");
System.out.println("Connection to server sucessfully");
//store data in redis list
jedis.lpush("tutorial-list", "Redis");
jedis.lpush("tutorial-list", "Mongodb");
jedis.lpush("tutorial-list", "Mysql");
But, when I use multithread to push the redis, it will throw the exception "read time out":
Exception in thread "main" java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601) at
org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader.main(JarRsrcLoader.java:58)
Caused by: redis.clients.jedis.exceptions.JedisConnectionException:
java.net.SocketTimeoutException: Read timed out at
redis.clients.util.RedisInputStream.ensureFill(RedisInputStream.java:201)
at
redis.clients.util.RedisInputStream.readByte(RedisInputStream.java:40)
at redis.clients.jedis.Protocol.process(Protocol.java:141) at
redis.clients.jedis.Protocol.read(Protocol.java:205) at
redis.clients.jedis.Connection.readProtocolWithCheckingBroken(Connection.java:297)
at
redis.clients.jedis.Connection.getBinaryMultiBulkReply(Connection.java:233)
at redis.clients.jedis.Jedis.keys(Jedis.java:185) at
org.v11.redis_mongo_task.UpdateApp.jobDetail(UpdateApp.java:23) at
org.v11.redis_mongo_task.UpdateApp.main(UpdateApp.java:42) ... 5 more
Caused by: java.net.SocketTimeoutException: Read timed out at
java.net.SocketInputStream.socketRead0(Native Method) at
java.net.SocketInputStream.read(SocketInputStream.java:150) at
java.net.SocketInputStream.read(SocketInputStream.java:121) at
java.net.SocketInputStream.read(SocketInputStream.java:107) at
redis.clients.util.RedisInputStream.ensureFill(RedisInputStream.java:195)
... 13 more
What happened for redis? why it can work in single thread?
According to this answer, a single Jedis instance is not threadsafe. You will have to use JedisPool for multithreading. You can read here on how use it and here to set the max connections and what will happen if those connections are all occupied.
I'm posting links since two of them are SO answers an they should get the credit and one is from github official repo, so if anything gets updated it should be reflected here too.
I'm loading a large number of nodes and relationships into an embedded Neo4j database. After about 10,000 inserts, it dies. If I stay under that point, then everything works great. Queries return as they should, as do inserts. It looks like somehow a database file is getting deleted in the middle of the inserts, which is causing everything to fall apart. My database builds itself from scratch, so if I completely delete my graphdb folder and restart it, it runs exactly the same every time. So how do you handle large embedded Neo4j databases?
Here are the pertinent errors.
From the Java output side
The transactions start not committing:
WorkerThread exception::org.neo4j.graphdb.TransactionFailureException::Unable to commit transaction
org.neo4j.graphdb.TransactionFailureException: Unable to commit transaction
at org.neo4j.kernel.TopLevelTransaction.close(TopLevelTransaction.java:140)
...
at java.lang.Thread.run(Thread.java:745)
Caused by: org.neo4j.graphdb.TransactionFailureException: commit threw exception
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:500)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:385)
at org.neo4j.kernel.impl.transaction.TransactionImpl.commit(TransactionImpl.java:123)
at org.neo4j.kernel.TopLevelTransaction.close(TopLevelTransaction.java:124)
... 4 more
Caused by: javax.transaction.xa.XAException
Then it informs me that there's a missing file in the database:
saction.TransactionImpl.doCommit(TransactionImpl.java:560)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:448)
... 7 more
Caused by: org.neo4j.kernel.impl.nioneo.store.UnderlyingStorageException: java.io.FileNotFoundException: /home/user/graphdb/schema/label/lucene/_1z6.frq (Protocol error)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.updateLabelScanStore(NeoStoreTransaction.java:814)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.applyCommit(NeoStoreTransaction.java:699)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.doCommit(NeoStoreTransaction.java:631)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:327)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commitWriteTx(XaResourceManager.java:632)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commit(XaResourceManager.java:533)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceHelpImpl.commit(XaResourceHelpImpl.java:64)
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:548)
... 8 more
Caused by: java.io.FileNotFoundException: /home/user/graphdb/schema/label/lucene/_1z6.frq (Protocol error)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:241)
at org.apache.lucene.store.FSDirectory$FSIndexOutput.<init>(FSDirectory.java:441)
at org.apache.lucene.store.FSDirectory.createOutput(FSDirectory.java:306)
at org.apache.lucene.index.FormatPostingsDocsWriter.<init>(FormatPostingsDocsWriter.java:47)
at org.apache.lucene.index.FormatPostingsTermsWriter.<init>(FormatPostingsTermsWriter.java:33)
at org.apache.lucene.index.FormatPostingsFieldsWriter.<init>(FormatPostingsFieldsWriter.java:51)
at org.apache.lucene.index.FreqProxTermsWriter.flush(FreqProxTermsWriter.java:85)
at org.apache.lucene.index.TermsHash.flush(TermsHash.java:113)
at org.apache.lucene.index.DocInverter.flush(DocInverter.java:70)
at org.apache.lucene.index.DocFieldProcessor.flush(DocFieldProcessor.java:60)
at org.apache.lucene.index.DocumentsWriter.flush(DocumentsWriter.java:581)
at org.apache.lucene.index.IndexWriter.doFlush(IndexWriter.java:3587)
at org.apache.lucene.index.IndexWriter.flush(IndexWriter.java:3552)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:450)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:399)
at org.apache.lucene.index.DirectoryReader.doOpenFromWriter(DirectoryReader.java:413)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:432)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:375)
at org.apache.lucene.index.IndexReader.openIfChanged(IndexReader.java:508)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:109)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:57)
at org.apache.lucene.search.ReferenceManager.maybeRefresh(ReferenceManager.java:137)
at org.neo4j.kernel.api.impl.index.LuceneLabelScanStore.refreshSearcher(LuceneLabelScanStore.java:159)
at org.neo4j.kernel.api.impl.index.LuceneLabelScanWriter.close(LuceneLabelScanWriter.java:82)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.updateLabelScanStore(NeoStoreTransaction.java:811)
... 15 more
Then I can no longer get a new transaction:
WorkerThread exception::org.neo4j.graphdb.TransactionFailureException::Unable to get transaction.
org.neo4j.graphdb.TransactionFailureException: Unable to get transaction.
at org.neo4j.kernel.InternalAbstractGraphDatabase.transactionRunning(InternalAbstractGraphDatabase.java:1064)
at org.neo4j.kernel.InternalAbstractGraphDatabase.beginTx(InternalAbstractGraphDatabase.java:1037)
at org.neo4j.kernel.TransactionBuilderImpl.begin(TransactionBuilderImpl.java:43)
at org.neo4j.kernel.InternalAbstractGraphDatabase.beginTx(InternalAbstractGraphDatabase.java:1024)
...
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.transaction.SystemException: Kernel has encountered some problem, please perform neccesary action (tx recovery/restart)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.neo4j.kernel.impl.transaction.KernelHealth.assertHealthy(KernelHealth.java:61)
at org.neo4j.kernel.impl.transaction.TxManager.assertTmOk(TxManager.java:339)
at org.neo4j.kernel.impl.transaction.TxManager.getTransaction(TxManager.java:725)
at org.neo4j.kernel.InternalAbstractGraphDatabase.transactionRunning(InternalAbstractGraphDatabase.java:1060)
... 7 more
Caused by: javax.transaction.xa.XAException
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:560)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:448)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:385)
at org.neo4j.kernel.impl.transaction.TransactionImpl.commit(TransactionImpl.java:123)
at org.neo4j.kernel.TopLevelTransaction.close(TopLevelTransaction.java:124)
... 4 more
Caused by: org.neo4j.kernel.impl.nioneo.store.UnderlyingStorageException: java.io.FileNotFoundException: /home/user/graphdb/schema/label/lucene/_1z6.frq (Protocol error)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.updateLabelScanStore(NeoStoreTransaction.java:814)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.applyCommit(NeoStoreTransaction.java:699)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.doCommit(NeoStoreTransaction.java:631)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:327)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commitWriteTx(XaResourceManager.java:632)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commit(XaResourceManager.java:533)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceHelpImpl.commit(XaResourceHelpImpl.java:64)
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:548)
... 8 more
Caused by: java.io.FileNotFoundException: /home/user/graphdb/schema/label/lucene/_1z6.frq (Protocol error)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:241)
at org.apache.lucene.store.FSDirectory$FSIndexOutput.<init>(FSDirectory.java:441)
at org.apache.lucene.store.FSDirectory.createOutput(FSDirectory.java:306)
at org.apache.lucene.index.FormatPostingsDocsWriter.<init>(FormatPostingsDocsWriter.java:47)
at org.apache.lucene.index.FormatPostingsTermsWriter.<init>(FormatPostingsTermsWriter.java:33)
at org.apache.lucene.index.FormatPostingsFieldsWriter.<init>(FormatPostingsFieldsWriter.java:51)
at org.apache.lucene.index.FreqProxTermsWriter.flush(FreqProxTermsWriter.java:85)
at org.apache.lucene.index.TermsHash.flush(TermsHash.java:113)
at org.apache.lucene.index.DocInverter.flush(DocInverter.java:70)
at org.apache.lucene.index.DocFieldProcessor.flush(DocFieldProcessor.java:60)
at org.apache.lucene.index.DocumentsWriter.flush(DocumentsWriter.java:581)
at org.apache.lucene.index.IndexWriter.doFlush(IndexWriter.java:3587)
at org.apache.lucene.index.IndexWriter.flush(IndexWriter.java:3552)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:450)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:399)
at org.apache.lucene.index.DirectoryReader.doOpenFromWriter(DirectoryReader.java:413)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:432)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:375)
at org.apache.lucene.index.IndexReader.openIfChanged(IndexReader.java:508)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:109)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:57)
at org.apache.lucene.search.ReferenceManager.maybeRefresh(ReferenceManager.java:137)
at org.neo4j.kernel.api.impl.index.LuceneLabelScanStore.refreshSearcher(LuceneLabelScanStore.java:159)
at org.neo4j.kernel.api.impl.index.LuceneLabelScanWriter.close(LuceneLabelScanWriter.java:82)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.updateLabelScanStore(NeoStoreTransaction.java:811)
... 15 more
From the messages.log side
It starts off getting memory mapping errors. This actually happens first when the database first comes online. But more trickle in before it totally dies:
2015-01-27 21:51:29.112+0000 ERROR [org.neo4j]: [/home/user/graphdb/neostore.nodestore.db] Unable to memory map Unable to map pos=0 recordSize=15 totalSize=1048575
org.neo4j.kernel.impl.nioneo.store.MappedMemException: Unable to map pos=0 recordSize=15 totalSize=1048575
at org.neo4j.kernel.impl.nioneo.store.MappedPersistenceWindow.<init>(MappedPersistenceWindow.java:59)
at org.neo4j.kernel.impl.nioneo.store.PersistenceWindowPool.allocateNewWindow(PersistenceWindowPool.java:656)
at org.neo4j.kernel.impl.nioneo.store.PersistenceWindowPool.expandBricks(PersistenceWindowPool.java:617)
at org.neo4j.kernel.impl.nioneo.store.PersistenceWindowPool.acquire(PersistenceWindowPool.java:144)
at org.neo4j.kernel.impl.nioneo.store.CommonAbstractStore.acquireWindow(CommonAbstractStore.java:546)
at org.neo4j.kernel.impl.nioneo.store.NodeStore.forceGetRecord(NodeStore.java:149)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreIndexStoreView$NodeStoreScan.run(NeoStoreIndexStoreView.java:327)
at org.neo4j.kernel.impl.api.index.IndexPopulationJob.indexAllNodes(IndexPopulationJob.java:212)
at org.neo4j.kernel.impl.api.index.IndexPopulationJob.run(IndexPopulationJob.java:107)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.IOException: Invalid argument
at sun.nio.ch.FileChannelImpl.map0(Native Method)
at sun.nio.ch.FileChannelImpl.map(FileChannelImpl.java:875)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.map(StoreFileChannel.java:57)
at org.neo4j.kernel.impl.nioneo.store.MappedPersistenceWindow.<init>(MappedPersistenceWindow.java:53)
... 13 more
Then, and I've figured out that this is when everything falls apart, I get this error in messages.log:
2015-01-27 21:59:41.516+0000 ERROR [org.neo4j]: setting TM not OK. Kernel has encountered some problem, please perform neccesary action (tx recovery/restart) null
javax.transaction.xa.XAException
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:560)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:448)
at org.neo4j.kernel.impl.transaction.TxManager.commit(TxManager.java:385)
at org.neo4j.kernel.impl.transaction.TransactionImpl.commit(TransactionImpl.java:123)
at org.neo4j.kernel.TopLevelTransaction.close(TopLevelTransaction.java:124)
...
at java.lang.Thread.run(Thread.java:745)
Caused by: org.neo4j.kernel.impl.nioneo.store.UnderlyingStorageException: java.io.FileNotFoundException: /home/user/graphdb/schema/label/lucene/_1z6.frq (Protocol error)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.updateLabelScanStore(NeoStoreTransaction.java:814)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.applyCommit(NeoStoreTransaction.java:699)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.doCommit(NeoStoreTransaction.java:631)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:327)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commitWriteTx(XaResourceManager.java:632)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.commit(XaResourceManager.java:533)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceHelpImpl.commit(XaResourceHelpImpl.java:64)
at org.neo4j.kernel.impl.transaction.TransactionImpl.doCommit(TransactionImpl.java:548)
... 8 more
Caused by: java.io.FileNotFoundException: /home/user/graphdb/schema/label/lucene/_1z6.frq (Protocol error)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(RandomAccessFile.java:241)
at org.apache.lucene.store.FSDirectory$FSIndexOutput.<init>(FSDirectory.java:441)
at org.apache.lucene.store.FSDirectory.createOutput(FSDirectory.java:306)
at org.apache.lucene.index.FormatPostingsDocsWriter.<init>(FormatPostingsDocsWriter.java:47)
at org.apache.lucene.index.FormatPostingsTermsWriter.<init>(FormatPostingsTermsWriter.java:33)
at org.apache.lucene.index.FormatPostingsFieldsWriter.<init>(FormatPostingsFieldsWriter.java:51)
at org.apache.lucene.index.FreqProxTermsWriter.flush(FreqProxTermsWriter.java:85)
at org.apache.lucene.index.TermsHash.flush(TermsHash.java:113)
at org.apache.lucene.index.DocInverter.flush(DocInverter.java:70)
at org.apache.lucene.index.DocFieldProcessor.flush(DocFieldProcessor.java:60)
at org.apache.lucene.index.DocumentsWriter.flush(DocumentsWriter.java:581)
at org.apache.lucene.index.IndexWriter.doFlush(IndexWriter.java:3587)
at org.apache.lucene.index.IndexWriter.flush(IndexWriter.java:3552)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:450)
at org.apache.lucene.index.IndexWriter.getReader(IndexWriter.java:399)
at org.apache.lucene.index.DirectoryReader.doOpenFromWriter(DirectoryReader.java:413)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:432)
at org.apache.lucene.index.DirectoryReader.doOpenIfChanged(DirectoryReader.java:375)
at org.apache.lucene.index.IndexReader.openIfChanged(IndexReader.java:508)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:109)
at org.apache.lucene.search.SearcherManager.refreshIfNeeded(SearcherManager.java:57)
at org.apache.lucene.search.ReferenceManager.maybeRefresh(ReferenceManager.java:137)
at org.neo4j.kernel.api.impl.index.LuceneLabelScanStore.refreshSearcher(LuceneLabelScanStore.java:159)
at org.neo4j.kernel.api.impl.index.LuceneLabelScanWriter.close(LuceneLabelScanWriter.java:82)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreTransaction.updateLabelScanStore(NeoStoreTransaction.java:811)
... 15 more
2015-01-27 21:59:41.519+0000 ERROR [org.neo4j]: TM error tx commit commit threw exception
Any ideas on what's causing that .frq file to disappear?
We resolved it in a side-conversation, maximum open files was too low (4000) which is also reported at startup.
That causes Lucene to break internally.
After increasing the limit the OP could import the data successfully.
I'm trying to make my SOAP service more robust, and handle clients that disconnect while the method they called is still running. I'm using #WebService and javax.jws.WebService.
The problem is that the called code ignores the disconnecting client and continues running, and only fails after it tries to return. I'd like to reverse the processing done but don't know how to catch this exception as it's simply printed after the method returns.
javax.xml.ws.WebServiceException: javax.xml.stream.XMLStreamException: java.io.IOException: Broken pipe
at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.encode(StreamSOAPCodec.java:101)
at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.encode(SOAPBindingCodec.java:249)
at com.sun.xml.internal.ws.transport.http.HttpAdapter.encodePacket(HttpAdapter.java:328)
at com.sun.xml.internal.ws.transport.http.HttpAdapter.access$100(HttpAdapter.java:82)
at com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(HttpAdapter.java:470)
at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(HttpAdapter.java:233)
at com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(WSHttpHandler.java:95)
at com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(WSHttpHandler.java:80)
at com.sun.net.httpserver.Filter$Chain.doFilter(Filter.java:65)
at sun.net.httpserver.AuthFilter.doFilter(AuthFilter.java:65)
at com.sun.net.httpserver.Filter$Chain.doFilter(Filter.java:68)
at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(ServerImpl.java:557)
at com.sun.net.httpserver.Filter$Chain.doFilter(Filter.java:65)
at sun.net.httpserver.ServerImpl$Exchange.run(ServerImpl.java:529)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
Caused by: javax.xml.stream.XMLStreamException: java.io.IOException: Broken pipe
at com.sun.xml.internal.stream.writers.XMLStreamWriterImpl.flush(XMLStreamWriterImpl.java:388)
at com.sun.xml.internal.ws.streaming.XMLStreamWriterUtil.getOutputStream(XMLStreamWriterUtil.java:86)
at com.sun.xml.internal.ws.message.jaxb.JAXBMessage.writePayloadTo(JAXBMessage.java:308)
at com.sun.xml.internal.ws.message.AbstractMessageImpl.writeTo(AbstractMessageImpl.java:131)
at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.encode(StreamSOAPCodec.java:98)
... 16 more
Caused by: java.io.IOException: Broken pipe
at sun.nio.ch.FileDispatcher.write0(Native Method)
at sun.nio.ch.SocketDispatcher.write(SocketDispatcher.java:29)
at sun.nio.ch.IOUtil.writeFromNativeBuffer(IOUtil.java:69)
at sun.nio.ch.IOUtil.write(IOUtil.java:40)
at sun.nio.ch.SocketChannelImpl.write(SocketChannelImpl.java:336)
at sun.net.httpserver.Request$WriteStream.write(Request.java:397)
at sun.net.httpserver.ChunkedOutputStream.writeChunk(ChunkedOutputStream.java:108)
at sun.net.httpserver.ChunkedOutputStream.flush(ChunkedOutputStream.java:138)
at sun.net.httpserver.PlaceholderOutputStream.flush(ExchangeImpl.java:395)
at java.io.FilterOutputStream.flush(FilterOutputStream.java:123)
at com.sun.xml.internal.stream.writers.UTF8OutputStreamWriter.flush(UTF8OutputStreamWriter.java:140)
at com.sun.xml.internal.stream.writers.XMLStreamWriterImpl.flush(XMLStreamWriterImpl.java:386)
... 20 more