I have the following script which does close to what I need; that is, to search the whole system for jar files that contain a specific java class file. My only issue with this script is getting it to acknowledge when it has found a class file in the jar based on the class name I pass in. The script at the moment only gives me back the class package inside the jar, not the jar it is in, which means its kind of useless. I'm trying to use $? to check if the search command was successful and if so echo the directory it was in into a file. It's always returning success(0) though, so every jar location it finds it is appending to the file. I'll stop talking now, can someone run this script and see what it is doing vs what I am trying to do?
if [ $# -ne 1 ]
then
echo "Need to provide class name as argument"
exit 1
fi
> findClassResults.txt
for i in $(locate "*.jar");
do
if [ -d $i ]
then
continue
fi
if jar -tvf $i | grep -Hsi $1.class 1>/dev/null
then
potentialMatches=`jar -tvf $i | grep -Hsi $1.class`
exactMatch=`echo $potentialMatches | grep -o \/$1.class`
if [ ! -z $exactMatch ]
then
echo "matches found: " $potentialMatches >> findClassResults.txt
echo ".....in jar #: " $i >> findClassResults.txt
echo -e "\n" >> findClassResults.txt
fi
fi
done
Edit: the above is now the working script. It will find any .class file and the location of its jar on the system by passing in the name of the class e.g. ./findClass.sh MyClass
Redirect the output of the loop as a whole to your results file, not each command individually (and use a while loop to iterate over the results, not a for loop):
< <(locate "*.jar") while read -r i
do
if [ -d "$i" ] #mvn repos have dirs named as .jar, so skip...
then
continue
fi
if jar -tvf "$i" | grep -q -Hsi "$1.class"
then
echo "jar location: $i"
fi
done | tee -a findClassResutls.txt
the $? you're using there is on the tee command, which I bet pretty well always succeeds. You probably want Pipe output and capture exit status in Bash
I am currently trying to install a program from Sourceforge. The installation process requires that I change directory paths in the makefile and execute it. I have been researching how to run the makefile but I am still lost and was hoping to get some help or be pointed in the right direction. I am running Windows 8.1. I believe the program is going to execute a java class file. However, I am unfamiliar with the language and not sure how I should alter the makefile to run in windows 8.1. I tried to run "make" in the command prompt but that didn't work. I posted the makefile below. I understand I should change the directory for ImageJ (which I have installed). But I'm not sure how I should alter path for windows and how I can then execute it. The manual instructs me to change IMAGEJ_DIR to the installation place of the program ImageJ. Then execute "make" and "make install" will generate the jar file. "My imageJ folder is located at C:\Program Files. Do I need to change the directory to execute this makefile, and if so how can I do that in windows? The makefile itself is located in my downloads folder. Any help would be greatly appreciated. Thanks!
JC=javac IMAGEJ_DIR=/home/wenja/ImageJ PLUGIN_DIR=$(IMAGEJ_DIR)/plugins/OpenBeamProfiler IJ_JAR=$(IMAGEJ_DIR)/ij.jar APACHEMATH_JAR=$(IMAGEJ_DIR)/plugins/commons-math3-3.2.jar LIBJAR=$(IJ_JAR):$(APACHEMATH_JAR) CLASSPATH=$(IMAGEJ_DIR):./:$(LIBJAR) CLASSDIR=./classes COMPILEFLAGS=
COMPILEFLAGS=-Xlint:deprecation
COMPILEFLAGS=-Xlint:unchecked
all: $(CLASSDIR)/BeamProfiler_Plugin.class $(CLASSDIR)/BeamProfilerFrame.class $(CLASSDIR)/BeamProfilerResultFrame.class $(CLASSDIR)/BeamViewWindow.class $(CLASSDIR)/BeamFunctionGauss.class $(CLASSDIR)/BeamFunctionSuperGauss.class
clean: rm -f $(CLASSDIR)/*.class rm -f *.jar
$(CLASSDIR)/BeamProfiler_Plugin.class: BeamProfiler_Plugin.java $(JC) $(COMPILEFLAGS) -cp $(CLASSPATH) -d $(CLASSDIR) BeamProfiler_Plugin.java
$(CLASSDIR)/BeamProfilerFrame.class: BeamProfilerFrame.java $(JC) $(COMPILEFLAGS) -cp $(CLASSPATH) -d $(CLASSDIR) BeamProfilerFrame.java
$(CLASSDIR)/BeamProfilerResultFrame.class: BeamProfilerResultFrame.java $(JC) $(COMPILEFLAGS) -cp $(CLASSPATH) -d $(CLASSDIR) BeamProfilerResultFrame.java
$(CLASSDIR)/BeamViewWindow.class: BeamViewWindow.java $(JC) $(COMPILEFLAGS) -cp $(CLASSPATH) -d $(CLASSDIR) BeamViewWindow.java
$(CLASSDIR)/BeamFunctionGauss.class: BeamFunctionGauss.java $(JC) $(COMPILEFLAGS) -cp $(CLASSPATH) -d $(CLASSDIR) BeamFunctionGauss.java
$(CLASSDIR)/BeamFunctionSuperGauss.class: BeamFunctionSuperGauss.java $(JC) $(COMPILEFLAGS) -cp $(CLASSPATH) -d $(CLASSDIR) BeamFunctionSuperGauss.java
Note: the "_" in the jar file name in important to be recognized by ImageJ
for including manifest use
jar cfm Beam_Profiler.jar Manifest.txt BeamProfiler_Plugin.class BeamProfilerFrame.class BeamProfilerResultFrame.class
it is important to jar *.class to also get ...$1.class etc.
jar: all cd $(CLASSDIR) &&\ jar cf Beam_Profiler.jar * &&\ mv Beam_Profiler.jar ../
install: jar #if test ! -d $(PLUGIN_DIR); then mkdir $(PLUGIN_DIR); fi
cp Beam_Profiler.jar $(PLUGIN_DIR)
uninstall: rm -f $(PLUGIN_DIR)/Beam_Profiler.jar
Try this,
Open command prompt => Go to windows start menu (run programs) -> type the command "cmd.exe"; this will list the command prompt program in the list. Open the command prompt. Probably it'll be defaulted to your home directory. So issue the command "cd Downloads\directory_of_the_program_to_install" to navigate to the program directory. Now go to the real program folder, then find that make file, open it in edit mode, and then change the entry
IMAGEJ_DIR=c:\program files\imagej_directory. Then go to the command prompt that we opened before, and issue the command make and then makeinstall. This would do the trick.
I am a PhD student of software testing. I made a script to test all the classes in a specific folder. However to make it fully automatic I would need a script that extract all the jar files in a respective folder and copy both the paths before and after extracting the jar file. For example
If I have AAA.jar at location /Users/mian/Systems/AAA.jar and AAA.jar on extraction create the folders and class org/apple/orange/banana.class then I would like to separately assign org/apple/orange/ to variable VAR1 and /Users/mian/Systems/org/apple/orange/ to VAR2.
The script I have so far is this
#!/bin/bash
STR1="/Users/mian/QualitasCorpus/Systems/freecs/freecs-1.3.20100406/bin/freecs-1.3.20100406/lib/"
STR2="freecs.commands."
for i in $( ls $STR1 ); do
if [[ $i == *.class ]]
then
echo " ################## The Class under test is "$i" ############################" >> result.traces
java yeti.YetiWithDaikon -java -time=10s -nologs -ADFDPlus -testModules="$STR2${i%.*}" >> result.traces
echo " %%%%%%%%%%%%%%%%%%%% The Class is finished testing %%%%%%%%%%%%%%%%%%%%%%%%%" >> result.traces
fi
done
echo "##################################################################################" >> result.traces
echo "############################### End of Folder ####################################" >> result.traces
echo "##################################################################################" >> result.traces
mv result.traces resultsOf"$STR2"traces
This script writes info about the jar file. Names of variables are included in echo.
#!/bin/bash
echo ""
STR1=$(dirname $(realpath $1".jar"))
unzip -qo $1".jar" -d $1 #unzip jar file to working_directory/jarname/
list=$(tree $1 -Rnfi --noreport | grep ".class") #gets the raw .class file list
list=$(echo $list | sed -e 's/'$1'\.//g') #removes the first foldername
list=$(echo $list | sed -e 's/\/class//g') #removes the last .class
list2=$list
list=$(echo $list | sed -e 's/\//\./g') #changes / to .
OLD_IFS=$IFS
IFS=$'\n'" "
echo -e "STR1=\033[34m"$STR1"\033[0m\n"
echo -e "FOLDER=\033[31m"$1"\033[0m\n"
for STR2 in $list
do
echo -e "STR2=\033[32m"$STR2"\033[0m"
done
echo ""
for STR3 in $list2
do
echo -e "STR3=\033[33m"$STR3"\033[0m"
done
echo ""
IFS=$OLD_IFS
Usage:
You have a jar file called freecs.jar. Run it with:
SCRIPTNAME jarfilename
without the .jar extension.
I have a java project, and need to write makefile to let it run on Linux. My project includes external jar files and resource package(.txt resourses).I am really a newbie for Linux, and just learn how to write makefile.
I refer to some materials and write a makefile like this:
# Set the file name of your jar package:
JAR_PKG = ADBproject1.jar
# Set your entry point of your java app:
ENTRY_POINT = adb/Bing_WebResults/Run.java
# Need resource directory
RES_DIR = yes
SOURCE_FILES = \
adb/jsonModels/Metadata.java \
adb/jsonModels/Result.java \
adb/jsonModels/Data.java \
adb/jsonModels/DataContainer.java \
adb/models/Weight_ID.java \
adb/models/Pair.java \
adb/models/Document.java \
adb/models/Collections.java \
adb/Bing_WebResults/Bing_Search.java\
adb/Bing_WebResults/Run.java \
JAVAC = javac
JFLAGS = -encoding UTF-8
vpath %.class bin
vpath %.java src
# show help message by default
Default:
#echo "make new: new project, create src, bin, res dirs."
#echo "make build: build project."
#echo "make clean: clear classes generated."
#echo "make rebuild: rebuild project."
#echo "make run: run your app."
#echo "make jar: package your project into a executable jar."
build: $(SOURCE_FILES:.java=.class)
# pattern rule
%.class: %.java
$(JAVAC) -cp bin -d bin $(JFLAGS) $<
rebuild: clean build
.PHONY: new clean run jar
new:
ifeq ($(RES_DIR),yes)
mkdir -pv src bin res
else
mkdir -pv src bin
endif
clean:
rm -frv bin/*
run:
java -cp bin $(ENTRY_POINT)
jar:
ifeq ($(RES_DIR),yes)
jar cvfe $(JAR_PKG) $(ENTRY_POINT) -C bin . res
else
jar cvfe $(JAR_PKG) $(ENTRY_POINT) -C bin .
endif
But I don't know how to add those two external .jar files (gson.jar, commons.jar) into makefile. And I'm not quite sure, whether the file paths I wrote are correct.
javac has a -cp and -classpath argument:
-classpath <path> Specify where to find user class files and
annotation processors
-cp <path> Specify where to find user class files and
annotation processors
They seem to be equivalent as far as the documentation is concerned.
I solve the problem by adding all *.jar files to a new folder "lib".
Then
javac -sourcepath src/ -classpath lib/*.jar
will solve the external jar file problem.
I'm new to Scala and don't know Java. I want to create a jar file out of a simple Scala file. So I have my HelloWorld.scala, generate a HelloWorld.jar.
Manifest.mf:
Main-Class: HelloWorld
In the console I run:
fsc HelloWorld.scala
jar -cvfm HelloWorld.jar Manifest.mf HelloWorld\$.class HelloWorld.class
java -jar HelloWorld.jar
=> "Exception in thread "main" java.lang.NoClassDefFoundError: HelloWorld/jar"
java -cp HelloWorld.jar HelloWorld
=> Exception in thread "main" java.lang.NoClassDefFoundError: scala/ScalaObject
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:675)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
at java.lang.ClassLoader.loadClass(ClassLoader.java:316)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:280)
at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:374)
at hoppity.main(HelloWorld.scala)
Sample directory structure:
X:\scala\bin
X:\scala\build.bat
X:\scala\MANIFEST.MF
X:\scala\src
X:\scala\src\foo
X:\scala\src\foo\HelloWorld.scala
HelloWorld.scala:
//file: foo/HelloWorld.scala
package foo {
object HelloWorld {
def main(args: Array[String]) {
println("Hello, world!")
}
}
}
MANIFEST.MF:
Main-Class: foo.HelloWorld
Class-Path: scala-library.jar
build.bat:
#ECHO OFF
IF EXIST hellow.jar DEL hellow.jar
IF NOT EXIST scala-library.jar COPY %SCALA_HOME%\lib\scala-library.jar .
CALL scalac -sourcepath src -d bin src\foo\HelloWorld.scala
CD bin
jar -cfm ..\hellow.jar ..\MANIFEST.MF *.*
CD ..
java -jar hellow.jar
In order to successfully use the -jar switch, you need two entries in the META-INF/MANIFEST.MF file: the main class; relative URLs to any dependencies. The documentation notes:
-jar
Execute a program encapsulated in a
JAR file. The first argument is the
name of a JAR file instead of a
startup class name. In order for this
option to work, the manifest of the
JAR file must contain a line of the
form Main-Class: classname. Here,
classname identifies the class having
the public static void main(String[]
args) method that serves as your
application's starting point. See the
Jar tool reference page and the Jar
trail of the Java Tutorial for
information about working with Jar
files and Jar-file manifests.
When you use this option, the JAR file
is the source of all user classes,
and other user class path settings are ignored.
java command line usage
manifest spec
(Notes: JAR files can be inspected with most ZIP applications; I probably neglect handling spaces in directory names in the batch script; Scala code runner version 2.7.4.final .)
For completeness, an equivalent bash script:
#!/bin/bash
if [ ! $SCALA_HOME ]
then
echo ERROR: set a SCALA_HOME environment variable
exit
fi
if [ ! -f scala-library.jar ]
then
cp $SCALA_HOME/lib/scala-library.jar .
fi
scalac -sourcepath src -d bin src/foo/HelloWorld.scala
cd bin
jar -cfm ../hellow.jar ../MANIFEST.MF *
cd ..
java -jar hellow.jar
Because Scala scripts require the Scala libraries to be installed, you will have to include the Scala runtime along with your JAR.
There are many strategies for doing this, such as jar jar, but ultimately the issue you're seeing is that the Java process you've started can't find the Scala JARs.
For a simple stand-alone script, I'd recommend using jar jar, otherwise you should start looking at a dependency management tool, or require users to install Scala in the JDK.
I ended up using sbt assembly, it is really simple to use. I added a file called assembly.sbt into the project/ directory at the root of the project with a one liner (Note your version might need to be changed).
addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "0.11.2")
Then just run the assembly task in sbt:
> assembly
Or just 'sbt assembly' in project root directory
$ sbt assembly
It will first run your tests and then it will generate the new jar into the target/ directory (given that my build.sbt already lists all my dependencies).
In my case, I just make that .jar file executable, rename to remove the extension and it is ready to ship!
Also, if you are doing a command line tool, don't forget to add a man page (I hate scripts without proper manpages or with multi-page plain text documentation that is not even piped into a pager for you).
You can also use maven and the maven-scala-plugin. Once you set up maven, you can just do mvn package and it will create your jar for you.
I tried to reproduce MyDowell's method. Finally I could make it work. However I find that the answer though correct a bit too complicated for a novice ( in particular the directory structure is unnecessarily complicated ).
I can reproduce this result with very simplistic means. To start with there is only one directory which contains three files:
helloworld.scala
MANIFEST.MF
scala-library.jar
helloworld.scala
object HelloWorld
{
def main(args: Array[String])
{
println("Hello, world!")
}
}
MANIFEST.MF:
Main-Class: HelloWorld
Class-Path: scala-library.jar
first compile helloworld.scala:
scalac helloworld.scala
then create the jar:
\progra~1\java\jdk18~1.0_4\bin\jar -cfm helloworld.jar MANIFEST.MF .
now you can run it with:
java -jar helloworld.jar
I found this simple solution because the original one did not work. Later I found out that not because it is wrong, but because of a trivial error: if I don't close the second line in MANIFEST.MF with a newline, then this line will be ignored. This took me an hour to find out and I tried all other things before, in the process finding this very simple solution.
I don't want to write why's and how's rather just show the solution which worked in my case (via Linux Ubuntu command line):
1)
mkdir scala-jar-example
cd scala-jar-example
2)
nano Hello.scala
object Hello extends App { println("Hello, world") }
3)
nano build.sbt
import AssemblyKeys._
assemblySettings
name := "MyProject"
version := "1.0"
scalaVersion := "2.11.0"
3)
mkdir project
cd project
nano plugins.sbt
addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "0.9.1")
4)
cd ../
sbt assembly
5)
java -jar target/target/scala-2.11/MyProject-assembly-1.0.jar
>> Hello, world
I modified the bash script adding some intelligence including auto-manifest generation.
This script assumes that the main object is named the same as the file it is in (case sensitive). Also, either the current directory name must equal to the main object name or the main object name should be provided as a command line parameter. Launch this script from the root directory of your project. Modify the variables at the top as required.
Be aware that the script will generate the bin and dist folders and will ERASE any existing contents in bin.
#!/bin/bash
SC_DIST_PATH=dist
SC_SRC_PATH=src
SC_BIN_PATH=bin
SC_INCLUDE_LIB_JAR=scala-library.jar
SC_MANIFEST_PATH=MANIFEST.MF
SC_STARTING_PATH=$(pwd)
if [[ ! $SCALA_HOME ]] ; then
echo "ERROR: set a SCALA_HOME environment variable"
exit 1
fi
if [[ ! -f $SCALA_HOME/lib/$SC_INCLUDE_LIB_JAR ]] ; then
echo "ERROR: Cannot find Scala Libraries!"
exit 1
fi
if [[ -z "$1" ]] ; then
SC_APP=$(basename $SC_STARTING_PATH)
else
SC_APP=$1
fi
[[ ! -d $SC_DIST_PATH ]] && mkdir $SC_DIST_PATH
if [[ ! -d $SC_BIN_PATH ]] ; then
mkdir "$SC_BIN_PATH"
else
rm -r "$SC_BIN_PATH"
if [[ -d $SC_BIN_PATH ]] ; then
echo "ERROR: Cannot remove temp compile directory: $SC_BIN_PATH"
exit 1
fi
mkdir "$SC_BIN_PATH"
fi
if [[ ! -d $SC_SRC_PATH ]] || [[ ! -d $SC_DIST_PATH ]] || [[ ! -d $SC_BIN_PATH ]] ; then
echo "ERROR: Directory not found!: $SC_SRC_PATH or $SC_DIST_PATH or $SC_BIN_PATH"
exit 1
fi
if [[ ! -f $SC_DIST_PATH/$SC_INCLUDE_LIB_JAR ]] ; then
cp "$SCALA_HOME/lib/$SC_INCLUDE_LIB_JAR" "$SC_DIST_PATH"
fi
SCALA_MAIN=$(find ./$SC_SRC_PATH -name "$SC_APP.scala")
COMPILE_STATUS=$?
SCALA_MAIN_COUNT=$(echo "$SCALA_MAIN" | wc -l)
if [[ $SCALA_MAIN_COUNT != "1" ]] || [[ ! $COMPILE_STATUS == 0 ]] ; then
echo "Main source file not found or too many exist!: $SC_APP.scala"
exit 1
fi
if [[ -f $SC_DIST_PATH/$SC_APP.jar ]] ; then
rm "$SC_DIST_PATH/$SC_APP.jar"
if [[ -f $SC_DIST_PATH/$SC_APP.jar ]] ; then
echo "Unable to remove existing distribution!: $SC_DIST_PATH/$SC_APP.jar"
exit 1
fi
fi
if [[ ! -f $SC_MANIFEST_PATH ]] ; then
LEN_BASE=$(echo $(( $(echo "./$SC_SRC_PATH" |wc -c) - 0 )))
SC_MAIN_CLASS=$(echo $SCALA_MAIN |cut --complement -c1-$LEN_BASE)
SC_MAIN_CLASS=${SC_MAIN_CLASS%%.*}
SC_MAIN_CLASS=$(echo $SC_MAIN_CLASS |awk '{gsub( "/", "'"."'"); print}')
echo $(echo "Main-Class: "$SC_MAIN_CLASS) > $SC_MANIFEST_PATH
echo $(echo "Class-Path: "$SC_INCLUDE_LIB_JAR) >> $SC_MANIFEST_PATH
fi
scalac -sourcepath $SC_SRC_PATH -d $SC_BIN_PATH $SCALA_MAIN
COMPILE_STATUS=$?
if [[ $COMPILE_STATUS != "0" ]] ; then
echo "Compile Failed!"
exit 1
fi
cd "$SC_BIN_PATH"
jar -cfm ../$SC_DIST_PATH/$SC_APP.jar ../$SC_MANIFEST_PATH *
COMPILE_STATUS=$?
cd "$SC_STARTING_PATH"
if [[ $COMPILE_STATUS != "0" ]] || [[ ! -f $SC_DIST_PATH/$SC_APP.jar ]] ; then
echo "JAR Build Failed!"
exit 1
fi
echo " "
echo "BUILD COMPLETE!... TO LAUNCH: java -jar $SC_DIST_PATH/$SC_APP.jar"
echo " "
One thing which may cause a similar problem (although it's not the problem in the initial question above) is that the Java vm seems to demand that the main method returns void. In Scala we can write something like (observe the =-sign in the definition of main):
object MainProgram {
def main(args: Array[String]) = {
new GUI(args)
}
}
where main actually returns a GUI-object (i.e. it's not void), but the program will run nicely when we start it using the scala command.
If we package this code into a jar-file, with MainProgram as the Main-Class, the Java vm will complain that there's no main function, since the return type of our main is not void (I find this complaint somewhat strange, since the return type is not part of the signature).
We would have no problems if we left out the =-sign in the header of main, or if we explicitly declared it as Unit.
If you do not wish to use sbt facilities I recommend the use of a makefile.
Here is an example where foo package is replaced by foo.bar.myApp for completeness.
makefile
NAME=HelloWorld
JARNAME=helloworld
PACKAGE=foo.bar.myApp
PATHPACK=$(subst .,/,$(PACKAGE))
.DUMMY: default
default: $(NAME)
.DUMMY: help
help:
#echo "make [$(NAME)]"
#echo "make [jar|runJar]"
#echo "make [clean|distClean|cleanAllJars|cleanScalaJar|cleanAppJar]"
.PRECIOUS: bin/$(PATHPACK)/%.class
bin/$(PATHPACK)/%.class: src/$(PATHPACK)/%.scala
scalac -sourcepath src -d bin $<
scala-library.jar:
cp $(SCALA_HOME)/lib/scala-library.jar .
.DUMMY: runjar
runJar: jar
java -jar $(JARNAME).jar
.DUMMY: jar
jar: $(JARNAME).jar
MANIFEST.MF:
#echo "Main-Class: $(PACKAGE).$(NAME)" > $#
#echo "Class-Path: scala-library.jar" >> $#
$(JARNAME).jar: scala-library.jar bin/$(PATHPACK)/$(NAME).class \
MANIFEST.MF
(cd bin && jar -cfm ../$(JARNAME).jar ../MANIFEST.MF *)
%: bin/$(PATHPACK)/%.class
scala -cp bin $(PACKAGE).$#
.DUMMY: clean
clean:
rm -R -f bin/* MANIFEST.MF
cleanAppJar:
rm -f $(JARNAME).jar
cleanScalaJar:
rm -f scala-library.jar
cleanAllJars: cleanAppJar cleanScalaJar
distClean cleanDist: clean cleanAllJars