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Disable popup "Restore Pages? Chrome didn't shut down correctly." in selenium webdriver Java

Though I have seen some related questions, I am putting this question again as I am still facing the issue.
I have a website that asks for login verification code on first time login and then it does not ask in further login instances. If I dont use a custom browser profile, the site asks verification code every time when selenium runs the login. Hence I have used customed browser profile as below (this is not the question)
options.addArguments("user-data-dir=C:\\Users\\user\\AppData\\Local\\Google\\Chrome\\User Data\\default");
Then, After the test is finished, I quit the browser using
driver.quit();
Problem is, next time I run the test again, the chrome browser opens with the popup "Restore Pages? Chrome didn't shut down correctly." and the site asks for verification code again after login. Entering verification code is not part my script, so the script fails. Then I close the browser manually by clicking on the X on the top corner.
Then I run the test again, chrome browser opens Normally without the popup and the site does not ask for verification code, login is successful. then, script closes browser itself by the driver.quit().
Then I run the test again, chrome browser opens with the popup and test fails again.
This shows that driver.quit() is not closing the browser correctly.
I have tried several settings, but still the popup is coming.
preferences file -> "exit_type":"none" (as well as "normal") and exit cleanly = true
site settings -> pop-ups and redirects -> Blocked (recommended)
I have also tried checking alerts exists or not, but it says "No alert". Script does not detect the popup as alert.
How can I make sure the browser is opened NORMALLY every next time after driver.quit() closes the browser in the previous test run? Please help.
Below is my code: I use chrome extension, so I cannot disable extension also.
String extFilePath = "C:\\ChromeDriver\\Salesforce_inspector.crx";
System.setProperty("webdriver.chrome.driver","C:\\chromedriver\\chromedriver.exe");
ChromeOptions options = new ChromeOptions();
options.addExtensions(new File(extFilePath));
options.addArguments("--disable-notifications");
options.addArguments("user-data-dir=C:\\Users\\user\\AppData\\Local\\Google\\Chrome\\User Data\\default");
options.addArguments("--start-maximized");
WebDriver driver = new ChromeDriver(options);
try
{
driver.switchTo().alert();
System.out.println("alert accepted");
} // try
catch (NoAlertPresentException Ex)
{
System.out.println("No alert");
}
driver.get("salesforce url");
I dont want to use incognito mode, because I need to retain the cookies and passwords to prevent the login verification code issue mentioned earlier.

I solved this issue setting the exit_type to normal in the preferences after set up the user dir.
Map<String, Object> prefs = new HashMap<String, Object>();
prefs.put("profile.exit_type", "Normal");
options.setExperimentalOption("prefs", prefs);
In your case will be something like this
String extFilePath = "C:\\ChromeDriver\\Salesforce_inspector.crx";
System.setProperty("webdriver.chrome.driver","C:\\chromedriver\\chromedriver.exe");
ChromeOptions options = new ChromeOptions();
options.addExtensions(new File(extFilePath));
options.addArguments("user-data-dir=C:\\Users\\user\\AppData\\Local\\Google\\Chrome\\User Data\\default");
options.addArguments("--start-maximized");
Map<String, Object> prefs = new HashMap<String, Object>();
prefs.put("profile.exit_type", "Normal");
options.setExperimentalOption("prefs", prefs);
WebDriver driver = new ChromeDriver(options);
try
{
driver.switchTo().alert();
System.out.println("alert accepted");
} // try
catch (NoAlertPresentException Ex)
{
System.out.println("No alert");
}
driver.get("salesforce url");

Why is ChromeDriver not storing Cache when Quit is called in Headless mode?

I'm using the argument --user-data-dir=CacheData to save the Chrome session. But it only gets saved when the Chrome window is closed. When i call driver.Quit(); in Headless mode the session doesn't get saved because i assume that Chrome is just being killed. It works in non-headless mode.
Is there any way to save the session before quitting?
Code:
ChromeDriverService service = ChromeDriverService.CreateDefaultService(driverPath);
service.HideCommandPromptWindow = false;
ChromeOptions options = new ChromeOptions()
options.AddArgument("--user-data-dir=UserData");
chrome = new ChromeDriver(service, options);
//does stuff that i want to store in userdata
chrome.Quit();
//kills chrome and chrome doesnt store the userdata, only when i close the //window with the x

Using Selenium on https web application that runs over vpn

First of all, I need to state that I am total beginner with Selenium.
I am trying to test an application in firefox browser using Selenium. Due to security issues the application works only over vpn.
My problem occurs with the following steps; I create the webdriver and navigate to the start (login) page of application. I get an "Authorization request" popup. If I cancel the popup, then I get to a page that states "Connection is not secure" (it's https address). After I get passed that, I lose the part where Selenium program should populate username and password and it just stays on the login page.
My question, is there a way to start Selenium testing on an application so that it is already opened and prepared (ie logged in) in browser? I am not happy that username and password are hard-coded in Selenium code.
If that is not possible, how do I skip that authorization popup and problem with non-secure connection? How do I populate username and password in safest way?
Thanks!
public static void main(String[] args) {
System.setProperty("webdriver.gecko.driver", "C:\\Selenium-java-3.0.1\\geckodriver.exe");
// I tried also with this code bellow in comment, but it did not work, it did not even get to login page
//WebDriverWait wait = new WebDriverWait(driver, 10);
//Alert alert = wait.until(ExpectedConditions.alertIsPresent());
//alert.authenticateUsing(new UserAndPassword("cfadmin", "20lipim18"));
driver.get("https://Application_login_page.com");
driver.findElement(By.xpath(".//*[#id='login']")).click();
driver.findElement(By.xpath("[#id='login']")).sendKeys("Username");
}

if it's possible, is there a way to start Selenium testing on application that is already opened and prepared (logged) in browser?
Try using firefox profile. Since selenium open fresh instance of browser by default. You can use your own firefox frofile.
This is a code to implement a profile, which can be embedded in the selenium code.
ProfilesIni profile = new ProfilesIni();
// this will create an object for the Firefox profile
FirefoxProfile myprofile = profile.getProfile("default");
// this will Initialize the Firefox driver
WebDriver driver = new FirefoxDriver(myprofile)
It will also maintain the session means you are already login to the application in firefox(default profile). Then if you execute the script, you will see that you are already logged in to the application.

There is no way to open already authorised page, you have to have to pass username and password through selenium script.
You may use below code to do the authentication
WebDriverWait wait = new WebDriverWait(driver, 10);
Alert alert = wait.until(ExpectedConditions.alertIsPresent());
alert.authenticateUsing(new UserAndPassword(username, password));

Selenium Webdriver Continuing After Site from get() Prompts for Cert

I'm writing a Java app in which I'm doing a simple driver.get(url) in which the url will prompt for a cert selection. I want to try and automate the cert selection process in Firefox 33 using the AutoIt jar, but I can't even get my Java program to continue after it executes this get, since the site is in an indefinite state of loading until a cert is selected, so the execution indefinitely stays on the get itself. Is there any way around this?

I found a similar question: Make Selenium Webdriver Stop Loading the page if the desired element is already loaded?
Ths solution given in the above link is to change the firefox settings in case the webpage is taking too long to load.
FirefoxBinary firefox = new FirefoxBinary(new File("/path/to/firefox.exe"));
FirefoxProfile customProfile = new FirefoxProfile();
customProfile.setPreference("network.http.connection-timeout", 10);
customProfile.setPreference("network.http.connection-retry-timeout", 10);
driver = new FirefoxDriver(firefox, customProfile);

Selenium Webdriver - Chrome - Switch Window and back - Unable to receive message from renderer

This is my first question on Stack Overflow. Thanks to all StackOverflow users who keeps technology passion ticking.
I am testing a web application with selenium Webdriver . It is payment webpage where, after selecting Payment method as 'PayPal' it opens up a new Popup , a PayPal popup and i Switch window to Paypal , do all my necessary Transaction. And once the Transaction is successful , automatically the paypal popup is closed, and i am not able to return to my original window from where i have initiated transaction.
I am getting following error in eclipse console:
Starting ChromeDriver (v2.9.248315) on port 25947
[70.164][SEVERE]: Unable to receive message from renderer
The following details might help :
selenium Webdriver (2.28.0)
java - JRE7
Google Chrome Version - Version 33.0.1750.146
Test Framework - Test NG
Here is my code :
// To Switch to Popup/Paypal window
String currentWindowHandle=driver.getWindowHandle();
Set<String> openWindowsList=driver.getWindowHandles();
String popUpWindowHandle=null;
for(String windowHandle:openWindowsList)
{
if (!windowHandle.equals(currentWindowHandle))
popUpWindowHandle=windowHandle;
}
driver.switchTo().window(popUpWindowHandle);
// Carraying out my paypal transaction
driver.manage().window().maximize();
driver.findElement(By.xpath("//*[#id='loadLogin']")).click();
Thread.sleep(8000);
WebElement login_email = driver.findElement(By.xpath("//*[#id='login_email']"));
login_email.clear();
login_email.sendKeys(Keys.BACK_SPACE);
login_email.sendKeys("abc#abc.com");
WebElement login_password = driver.findElement(By.xpath("//*[#id='login_password']"));
login_password.clear();
login_password.sendKeys("abcxyz");
// Next Click is Final Click on PayPal
driver.findElement(By.xpath("//*[#id='submitLogin']")).click();
// Transaction is finished on PayPal side and it automatically popup is closed
//Now i am trying to switch to my last working(original) window
driver.switchTo().window("My Web Page Title");

You should be using:
driver.switchTo().window(currentWindowHandle);

It causes because page took long time to load , you need add additional line to your chromedriver option.
System.setProperty("webdriver.chrome.driver","E:\\selenium\\chromedriver_2.41\\chromedriver.exe");
//mention the below chrome option to solve timeout exception issue
ChromeOptions options = new ChromeOptions();
options.setPageLoadStrategy(PageLoadStrategy.NONE);
// Instantiate the chrome driver
driver = new ChromeDriver(options);

The problem is resolved.
The place where I was declaring currentWindowHandle was after clicking and it takes the new window as the Current Window handle.
I just moved below statement to before the new window click event.
String currentWindowHandle=driver.getWindowHandle();
Thanks all for your time and Help.