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When I upgrade MatlabRuntime from 2019b to 2021b,I hava a proplem

When I upgrade MatlabRuntime from 2019b to 2021b and I hava a springboot service used matlab, I have a problem,I import newest javabulider.jar(2021b) into my springboot service, then I package and publish my service into server,then report an error,can someone help me,thank you
Caused by: java.lang.UnsatisfiedLinkError: Failed to find the required library libmwmclmcrrt.so.9.7 on java.library.path.
This library is typically installed along with MATLAB or the MATLAB Runtime. Its absence may indicate an issue with that installation or
the current path configuration, or a mismatch with the architecture of the Java interpreter on the path.
MATLAB Runtime version this component is attempting to use: 9.7.
Java interpreter architecture: glnxa64.
I need someone can help me

The message:
Failed to find the required library libmwmclmcrrt.so.9.7
Indicates that the application you are trying to execute was compiled with Matlab 2019b and that the corresponding MCR is not installed.

Logstash unable to start pipeline

I am working with Logstash v7.15.1 and when I am trying to run it, I am getting below error which I am unable to figure out. Will someone help me to fix this?
Note - I have removed several plugins comes bundled with Logstash as all were not part of my requirement.
[2021-11-10T11:38:45.045Z][ERROR][logstash.agent ] Failed to execute action {:action=>LogStash::PipelineAction::Create/pipeline_id:logstash, :exception=>"Java::JavaLang::NoSuchMethodError", :message=>"java.nio.MappedByteBuffer.position(I)Ljava/nio/MappedByteBuffer;", :backtrace=>["org.logstash.ackedqueue.io.MmapPageIOV2.create(MmapPageIOV2.java:194)", "org.logstash.ackedqueue.Queue.newCheckpointedHeadpage(Queue.java:352)", "org.logstash.ackedqueue.Queue.openPages(Queue.java:209)", "org.logstash.ackedqueue.Queue.open(Queue.java:176)", "org.logstash.ackedqueue.ext.JRubyAckedQueueExt.open(JRubyAckedQueueExt.java:123)", "org.logstash.ackedqueue.ext.JRubyWrappedAckedQueueExt.initialize(JRubyWrappedAckedQueueExt.java:65)", "org.logstash.ackedqueue.QueueFactoryExt.create(QueueFactoryExt.java:62)", "org.logstash.execution.AbstractPipelineExt.openQueue(AbstractPipelineExt.java:205)", "org.logstash.execution.AbstractPipelineExt$INVOKER$i$0$0$openQueue.call(AbstractPipelineExt$INVOKER$i$0$0$openQueue.gen)", "org.jruby.runtime.callsite.CachingCallSite.cacheAndCall(CachingCallSite.java:355)", "org.jruby.runtime.callsite.CachingCallSite.call(CachingCallSite.java:144)", "org.jruby.ir.interpreter.InterpreterEngine.processCall(InterpreterEngine.java:345)", "org.jruby.ir.interpreter.StartupInterpreterEngine.interpret(StartupInterpreterEngine.java:72)", "org.jruby.internal.runtime.methods.MixedModeIRMethod.INTERPRET_METHOD(MixedModeIRMethod.java:86)", "org.jruby.internal.runtime.methods.MixedModeIRMethod.call(MixedModeIRMethod.java:73)", "org.jruby.runtime.callsite.CachingCallSite.call(CachingCallSite.java:85)", "org.jruby.RubyClass.newInstance(RubyClass.java:939)", "org.jruby.RubyClass$INVOKER$i$newInstance.call(RubyClass$INVOKER$i$newInstance.gen)", "org.jruby.ir.targets.InvokeSite.invoke(InvokeSite.java:207)", "opt.logstash.logstash_minus_core.lib.logstash.pipeline_action.create.RUBY$method$execute$0(/opt/logstash/logstash-core/lib/logstash/pipeline_action/create.rb:52)", "opt.logstash.logstash_minus_core.lib.logstash.pipeline_action.create.RUBY$method$execute$0$__VARARGS__(/opt/logstash/logstash-core/lib/logstash/pipeline_action/create.rb)", "org.jruby.internal.runtime.methods.CompiledIRMethod.call(CompiledIRMethod.java:80)", "org.jruby.internal.runtime.methods.MixedModeIRMethod.call(MixedModeIRMethod.java:70)", "org.jruby.ir.targets.InvokeSite.invoke(InvokeSite.java:207)", "opt.logstash.logstash_minus_core.lib.logstash.agent.RUBY$block$converge_state$2(/opt/logstash/logstash-core/lib/logstash/agent.rb:391)", "org.jruby.runtime.CompiledIRBlockBody.callDirect(CompiledIRBlockBody.java:138)", "org.jruby.runtime.IRBlockBody.call(IRBlockBody.java:58)", "org.jruby.runtime.IRBlockBody.call(IRBlockBody.java:52)", "org.jruby.runtime.Block.call(Block.java:139)", "org.jruby.RubyProc.call(RubyProc.java:318)", "org.jruby.internal.runtime.RubyRunnable.run(RubyRunnable.java:105)", "java.lang.Thread.run(Thread.java:748)"]}
warning: thread "Converge PipelineAction::Create<logstash>" terminated with exception (report_on_exception is true):
LogStash::Error: Don't know how to handle `Java::JavaLang::NoSuchMethodError` for `PipelineAction::Create<logstash>`
create at org/logstash/execution/ConvergeResultExt.java:135

Apologies for posting incomplete information. After hours of troubleshooting, I was able to fix the issue. It was related to using different version of ruby and java. FYI, I am running Logstash in container and then deploying it on K8s cluster. I have removed plugins from Logstash source code itself and then build it.

"JAVA Parse Exception" error in Qualimap after MacOSX upgrade

I recently upgraded my MacOSX system to Catalina and several files were placed automatically into "Relocated items" folder on my Desktop. I recently tried to run the following code which had previously worked:
qualimap bamqc -bam Sample1_sorted.bam -c -outdir QualiMap/Sample1_sorted
and received the following error:
Java HotSpot(TM) 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
Error: Unable to initialize main class org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain
Caused by: java.lang.NoClassDefFoundError: org/apache/commons/cli/ParseException
I have seen many other posts related to this error but am unsure how to even go about trying some of the suggested solutions. I do not work directly with some of the applications/files mentioned in these forums, such as JAVA, Maven, AppAssembler, and the pom.xml file (I could not even find that file). As a result, I wished to ask about this error from the perspective of a biologist using qualimap.
How can I fix this error (with little knowledge of the above applications/files)? I can certainly work with these applications/files, but I would probably need more detailed/basic/low-level advice on how to access and modify them. Thank you!

It seems what qualimap is a java application someone else wrote. I would raise a ticket with whomever wrote this app.

After upgrading to new Jenkins version, builds are failing

I just upgraded the jenkins from 2.63 to 2.117 (Which I'm regretting now)
Here is the error message I'm getting at the end of all the jobs.
Please help me to understand and resolve this.
FATAL: java.lang.RuntimeException: Failed to serialize hudson.model.Actionable#actions for class hudson.model.FreeStyleBuild
java.lang.UnsupportedOperationException: Refusing to marshal java.io.PrintStream for security reasons; see https://jenkins.io/redirect/class-filter/
at hudson.util.XStream2$BlacklistedTypesConverter.marshal(XStream2.java:543)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller.convert(AbstractReferenceMarshaller.java:69)
at com.thoughtworks.xstream.core.TreeMarshaller.convertAnother(TreeMarshaller.java:58)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller$1.convertAnother(AbstractReferenceMarshaller.java:84)
at hudson.util.RobustReflectionConverter.marshallField(RobustReflectionConverter.java:265)
at hudson.util.RobustReflectionConverter$2.writeField(RobustReflectionConverter.java:252)
Caused: java.lang.RuntimeException: Failed to serialize org.jenkinsci.plugins.EnvironmentVarSetter#log for class org.jenkinsci.plugins.EnvironmentVarSetter
at hudson.util.RobustReflectionConverter$2.writeField(RobustReflectionConverter.java:256)
at hudson.util.RobustReflectionConverter$2.visit(RobustReflectionConverter.java:224)
at com.thoughtworks.xstream.converters.reflection.PureJavaReflectionProvider.visitSerializableFields(PureJavaReflectionProvider.java:138)
at hudson.util.RobustReflectionConverter.doMarshal(RobustReflectionConverter.java:209)
at hudson.util.RobustReflectionConverter.marshal(RobustReflectionConverter.java:150)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller.convert(AbstractReferenceMarshaller.java:69)
at com.thoughtworks.xstream.core.TreeMarshaller.convertAnother(TreeMarshaller.java:58)
at com.thoughtworks.xstream.core.TreeMarshaller.convertAnother(TreeMarshaller.java:43)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller$1.convertAnother(AbstractReferenceMarshaller.java:88)
at com.thoughtworks.xstream.converters.collections.AbstractCollectionConverter.writeItem(AbstractCollectionConverter.java:64)
at com.thoughtworks.xstream.converters.collections.CollectionConverter.marshal(CollectionConverter.java:74)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller.convert(AbstractReferenceMarshaller.java:69)
at com.thoughtworks.xstream.core.TreeMarshaller.convertAnother(TreeMarshaller.java:58)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller$1.convertAnother(AbstractReferenceMarshaller.java:84)
at hudson.util.RobustReflectionConverter.marshallField(RobustReflectionConverter.java:265)
at hudson.util.RobustReflectionConverter$2.writeField(RobustReflectionConverter.java:252)
Caused: java.lang.RuntimeException: Failed to serialize hudson.model.Actionable#actions for class hudson.model.FreeStyleBuild
at hudson.util.RobustReflectionConverter$2.writeField(RobustReflectionConverter.java:256)
at hudson.util.RobustReflectionConverter$2.visit(RobustReflectionConverter.java:224)
at com.thoughtworks.xstream.converters.reflection.PureJavaReflectionProvider.visitSerializableFields(PureJavaReflectionProvider.java:138)
at hudson.util.RobustReflectionConverter.doMarshal(RobustReflectionConverter.java:209)
at hudson.util.RobustReflectionConverter.marshal(RobustReflectionConverter.java:150)
at com.thoughtworks.xstream.core.AbstractReferenceMarshaller.convert(AbstractReferenceMarshaller.java:69)
at com.thoughtworks.xstream.core.TreeMarshaller.convertAnother(TreeMarshaller.java:58)
at com.thoughtworks.xstream.core.TreeMarshaller.convertAnother(TreeMarshaller.java:43)
at com.thoughtworks.xstream.core.TreeMarshaller.start(TreeMarshaller.java:82)
at com.thoughtworks.xstream.core.AbstractTreeMarshallingStrategy.marshal(AbstractTreeMarshallingStrategy.java:37)
at com.thoughtworks.xstream.XStream.marshal(XStream.java:1026)
at com.thoughtworks.xstream.XStream.marshal(XStream.java:1015)
at com.thoughtworks.xstream.XStream.toXML(XStream.java:988)
at hudson.XmlFile.write(XmlFile.java:193)
Caused: java.io.IOException
at hudson.XmlFile.write(XmlFile.java:200)
at hudson.model.Run.save(Run.java:1923)
at hudson.model.Run.setDisplayName(Run.java:803)
at org.jenkinsci.plugins.buildnamesetter.BuildNameSetter.setDisplayName(BuildNameSetter.java:76)
at org.jenkinsci.plugins.buildnamesetter.BuildNameSetter.access$000(BuildNameSetter.java:31)
at org.jenkinsci.plugins.buildnamesetter.BuildNameSetter$1.tearDown(BuildNameSetter.java:64)
at hudson.model.Build$BuildExecution.doRun(Build.java:174)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:504)
at hudson.model.Run.execute(Run.java:1727)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:429)
Note: Others who are using older version of jenkins, there is a big chance that all your jobs will be messed up. So, Please do not update jenkins as of now. (https://jenkins.io/blog/2018/03/15/jep-200-lts/)

You can try the solution given in the official site of Jenkins
https://issues.jenkins-ci.org/browse/JENKINS-49144
Add the three following entries to whitelisted-classes.txt:
java.util.concurrent.locks.ReentrantLock
java.util.concurrent.locks.ReentrantLock$NonfairSync
java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject

It is to do with the two things.
Permission to be updated to the .war file.
Build Pipeline plugin needs to be updated.
This solved my problem.

It's a known security fix in Jenkins https://github.com/jenkinsci/jep/tree/master/jep/200.
You can check list of affected plugins https://wiki.jenkins.io/display/JENKINS/Plugins+affected+by+fix+for+JEP-200 and upgrade your affected ones to overcome the error.

deploy java app on Heroku launch.main error

I want to deploy a java appa on HEROKU. I am new to maven. I made all set up as per in the deploy a sample app to heroku (java+maven+ tomcat7)documentation.
and i made a bulid,It was successfull. But as soon i typed sh /target/bin/weapps i am getting the following error. Can anybody help me to sort out this issue.
Exception in thread "main" java.lang.NoClassDefFoundError: launch/Main
Caused by: java.lang.ClassNotFoundException: launch.Main</br>
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: launch.Main. Program will exit.
regards,
arunbv

I had a similar problem, I (well, almost) solved it this way, just remove:
<packaging>war</packaging>
from pom.xml. I know this is not an ideal solution, but somehow the embedded tomcat plugin doesn't work with war packaging!

I don't have enough points to comment, but what article are you following? Can you link it?
Based on the error, I suspect your Main.java is not in src/main/java/launch. If you follow these instructions, I think you should be able to clear up the error:
http://devcenter.heroku.com/articles/create-a-java-web-application-using-embedded-tomcat
If that's the article you're following and you're still having trouble, it may ease the problems you're having if you simply clone the sample repo:
git clone git://github.com/heroku/devcenter-embedded-tomcat.git

Since you said you are new to maven, I think the reason of this error is that you simply put your *.java code under the root folder of the project, while you are rather expected to put it under ./src/main/java/
This should work for you. I experienced the same problem and figured this out.

This is probably dead, but in case it helps people of the future.
I was getting up and running with a java app on Heroku, using an Ubuntu machine for development - and got this same Exception in thread "main" java.lang.NoClassDefFoundError.
Double check that you're using the same java compiler version as your java sdk version.
type java -version & javac -version. Make sure they are the same version.
If not, you can fix this by reconfiguring your environment to use the same for both.
Assuming you have downloaded and installed the java version you want to use, type :
`sudo update-alternatives --config java`
You'll get a nice menu with options
Selection Path Priority Status
------------------------------------------------------------
* 0 /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java 1061 auto mode
1 /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java 1061 manual mode
2 /usr/lib/jvm/jdk1.7.0/bin/java 1
Select the version you wish to use. Done.
Now try to build.