I'm having an issue with Oracle 11g R2 Design Center feature. When I click it, it gives me the error below:
C:\app[username]\product\11.2.0\dbhome_1\owb\bin\win32>call setowbenv.bat
WARNING: Unknown directive: SetSkipJ2SDKCheck
WARNING: Could not find jvm.cfg! in 'C:\app[username]\product\11.2.0\dbhome_1\jdk\jre\lib\jvm.cfg'
WARNING: Cannot find default VM "client" at C:\app[username]\product\11.2.0\dbhome_1\jdk
ERROR: Cannot find VM at: C:\app[username]\product\11.2.0\dbhome_1\jdk
Aborting!
I've tried many things to resolve this, as listed below:
Download 32b version of JDK (actually, I've downloaded multiple to rule out the version issue, both 32 and 64)
Point environment variable and path to JDK installation
Change sqldeveloper.cfg file to include SetJavaHome {path to JDK}
Move the jvm.cfg file to the directory it's expected to be at
Checked the paths to ensure the expected files were there
With step 4, after doing so I receive a different error message:
"Client VM is unsupported"
With step 5, after doing so I realized the path to the executable was not in:
C:\app[username]\product\11.2.0\dbhome_1\jdk
But instead in:
C:\app[username]\product\11.2.0\dbhome_1\jdk\bin
So, from all of this I feel that if I can change the path the Oracle Design Center is using to the correct path, then this should resolve. Problem is, I'm unsure where to find this. Also, if it helps I believe the Design Center uses JDeveloper, since the error suggests to view the Oracle 9i JDeveloper Install Guide at jdev\install.html. I tried going to this link but I'm not sure if it exists anymore because it took me to Google. I chose the most relevant link but still, I did not find any information regarding this issue. If anyone can help I'd be very thankful, this has been running me in circles for 3 days now.
TIA
Related
I've followed about every tutorial I could find, but somehow I can't seem to get Nd4j to work with a Cuda backend. I think I'm missing a library, but I can't figure out which one or where to download it.
The error I'm getting is:
18:23:23.872 [main] WARN org.nd4j.linalg.factory.Nd4jBackend - Skipped [JCublasBackend] backend (unavailable): java.lang.UnsatisfiedLinkError: no cudart in java.library.path
18:23:23.958 [main] INFO org.nd4j.linalg.factory.Nd4jBackend - Loaded [CpuBackend] backend
I'm using Nd4j and I have (amongst a whole bunch of others) the following jars on my class path:
nd4j-native-1.0.0-beta3.jar
nd4j-native-api-1.0.0-beta3.jar
cuda-10.0-7.3-1.4.3.jar
nd4j-cuda-10.0-1.0.0-beta3.jar.
Cuda 10.0 is successfully installed:
C:\Users\username>nvcc -V
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2018 NVIDIA Corporation
Built on Sat_Aug_25_21:08:04_Central_Daylight_Time_2018
Cuda compilation tools, release 10.0, V10.0.130
I tried to point Java to the Cuda bin directory like so:
-Djava.library.path="C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v10.0\bin"
but that makes no difference. Furthermore, I've tried the mvn command on the pom.xml's inside nd4j-cuda-10.0-platform-1.0.0-beta3.jar and cuda-platform-10.0-7.3-1.4.3.jar, which results in a download of a lot of jars, but none of them appear to contain the dll I'm missing.
When searching around I found other users talking about jars like 'cuda-10.0-7.3-1.4.3-windows-x86_64.jar' that should contain a jnicudart.dll, but I can't find such a jar anywhere. What am I missing here?
--UPDATE--
I've updated everything to beta5, and found a cuda jar containing the missing jnicudart.dll, but I still get the same error. I have used Dependencies to check what's wrong, and this is the result:
It says the checksum of the NVidia cudart64_100.dll is incorrect. Would this be related to NVidia Cuda10 not supporting my Geforce GT 730 because it is a Fermi architecture? Or is the cuda installation corrupt or something?
please update your nd4j/dl4j version to 1.0.0-beta5
please tell me, what’s your GPU model name and nvidia driver version? i.e. show nvidia-smi output.
OK I figured it out; had to install Cuda8.0 and revert all Nd4j to beta2, and add the correct cuda-8.9-6.0-1.4.1-windows-x86_64.jar to my classpath. Furthermore, I had to restart my IDE for the windows PATH environment to be updated so that the CUDA 8 bin directory was in it. And then I found out that
CUDA backend requires compute capatibility of 3.0 and above to run
and my retro card was only 2.1, so all was for nothing :/
Will have to purchase a new GPU I guess...
I recently upgraded my MacOSX system to Catalina and several files were placed automatically into "Relocated items" folder on my Desktop. I recently tried to run the following code which had previously worked:
qualimap bamqc -bam Sample1_sorted.bam -c -outdir QualiMap/Sample1_sorted
and received the following error:
Java HotSpot(TM) 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
Error: Unable to initialize main class org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain
Caused by: java.lang.NoClassDefFoundError: org/apache/commons/cli/ParseException
I have seen many other posts related to this error but am unsure how to even go about trying some of the suggested solutions. I do not work directly with some of the applications/files mentioned in these forums, such as JAVA, Maven, AppAssembler, and the pom.xml file (I could not even find that file). As a result, I wished to ask about this error from the perspective of a biologist using qualimap.
How can I fix this error (with little knowledge of the above applications/files)? I can certainly work with these applications/files, but I would probably need more detailed/basic/low-level advice on how to access and modify them. Thank you!
It seems what qualimap is a java application someone else wrote. I would raise a ticket with whomever wrote this app.
Hello Palantir community on StackOverflow - if you exist?
I'm having a problem with pXML and PXZ files on a QuickStart instance (see below for details). If I export from Graph (even if only a few relatively small Objects), then try and reimport that file, I get the error message,
Error: The file [file path & name] is not a valid .pxz file:
com.palantir.exceptionPalantirUserMessageException. Unexpected error
while validating PalantirXML; please see the log for details.
The log will then give some version of,
Value " with length = '0' is not faced-valid with respect to minLength
'1' for type #AnonType_namedataSource;.
Multiple Java error references will then follow (195, 131, 384, 318, etc).
So this seems to be an issue with Palantir writing an XML file badly, then not recognising it when you try to reimport.
The XML file itself seems ok - it's not very small, all the XML tags close off, etc. But clearly there's a value somewhere that's meant to be a positive, and it's not being populated in the correct way. The errant tag isn't obvious, if that's the case.
Weirdly, I can usually export a single Object (or maybe two or three) - but not if the Object is too complex (eg has lots of Properties).
I'm using an installation of Palantir Quick Start 3.8 (3.8.2.8.603030, Java Version: 1.6.0_30 Sun Microsystems Inc. - Java HotSpot(TM) 64-Bit Server VM build 20.5-b03 64-bit).
I've tried various configurations of Java updates (6.3 32 & 64, 7.25 32 & 64, no Java update (Pal 3.8 comes with 6.3).
The computer is an Intel, 2.7 Ghz with 16 GB of RAM, running Windows 7 (SP1), 64bt.
I tried disabling the AV (McAfee) and Windows firewall - no difference.
I'll leave it there for now - very grateful for any advice / suggestions.
R
That's an old version of Palantir! I worked on the code you're seeing errors with through many versions of Gotham. The problem is that the first step in the import process is validating the pXML against its .xsd file. While writing, the library makes sure the XML is syntactically valid, but doesn't verify it against the schema.
That error makes it sound like a DataSource is missing some value that's required by the schema. Exporting from a new Investigation may work, but this bug would need to be fixed by a Palantir developer.
You could also try it later version where it may be fixed already.
I’m really having trouble installing Pl/Java on Mac, any help would be appreciated.
I’ll describe the exact steps I’ve done in accordance with the README here, but I still get some errors that I cannot resolve.
(1) I’ve downloaded this version: pljava-i686-pc-linux-gnu-pg9.0-1.4.2
(2) I’ve located three files in the directory: pljava.jar, deploy.jar, pljava.so
(3) I’ve put the two .jars inside: /Library/PostgreSQL/9.0/lib
(4) I’ve put the .so inside: /Library/PostgreSQL/9.0/data
(5) I’ve modified the postgresql.conf as follows:
dynamic_library_path = '$libdir'
custom_variable_classes = 'pljava'
pljava.classpath = '/Library/PostgreSQL/9.0/lib/pljava.jar’
(6) I’ve also tried:
dynamic_library_path = '$libdir:/Library/PostgreSQL/9.0/lib/' (as well as...)
dynamic_library_path = '$libdir:/Library/PostgreSQL/9.0/data/'
(7) I then try to run:
Select sqlj.install_jar('/Software/Libraries/test_trigger.jar', 'samples', false);
Select sqlj.set_classpath(‘public’, ‘samples’);
Although, I keep getting this error:
WARNING: java.lang.NoSuchMethodError: Method org.postgresql.pljava.internal.Portal._fetch(JZI)I not found
ERROR: Unable to register native methods
********** Error **********
ERROR: Unable to register native methods
SQL state: XX000
This sounds like an issue is in not loading the right .jar. You mentioned in your comments that you were also having a problem with appropriate environment variables specifying where to load modules. This may in fact be your main issue. It looks like the equivalent environment variable is DYLD_LIBRARY_PATH though you can get more options by looking at man dyld and obviously if you are loading the wrong .so or .jar you will get errors like this.
Hi I'm trying to install this tool 'Sean Corfield's scripting for ColdFusion project.' on my server - problem is I am getting "Class not found: com.caucho.quercus.script.QuercusScriptEngineFactory " errors, I have java 1.6 installed.... I'm not sure how where to get these extra classes ... any help?
[opensuse 11 system, CF8 java 1.6]
-thanks
-sean
Did you follow the installation instructions for the cfphp, as per the "example.cfm" page:
Installation:
1. Copy lib/quercus.jar and lib/resin-util.jar to WEB-INF/cfusion/lib/
(multiserver) or coldfusion8/lib (standalone)
2. Restart ColdFusion 8.
3. Optionally copy customtags/php.cfm into your custom tags path.
The important thing is that the quercus.jar is accessible to the JVM. Your error message indicates that the JVM can't find the jar.