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Issue with Spring batch metadata tables

I created the spring batch metadata tables using the following link in my own oracle database
https://github.com/spring-projects/spring-batch/tree/main/spring-batch-core/src/main/resources/org/springframework/batch/core
But when I run my spring batch, it throws me error:
ERROR org.springframework.batch.core.job.AbstractJob - Encountered fatal error executing job
org.springframework.dao.EmptyResultDataAccessException: Incorrect result size: expected 1, actual 0
at org.springframework.dao.support.DataAccessUtils.nullableSingleResult(DataAccessUtils.java:97) ~[spring-tx-5.3.18.jar:5.3.18]
at org.springframework.jdbc.core.JdbcTemplate.queryForObject(JdbcTemplate.java:880) ~[spring-jdbc-5.3.18.jar:5.3.18]
at org.springframework.jdbc.core.JdbcTemplate.queryForObject(JdbcTemplate.java:906) ~[spring-jdbc-5.3.18.jar:5.3.18]
at org.springframework.batch.core.repository.dao.JdbcJobExecutionDao.synchronizeStatus(JdbcJobExecutionDao.java:307) ~[spring-batch-core-4.3.5.jar:4.3.5]
at org.springframework.batch.core.repository.support.SimpleJobRepository.update(SimpleJobRepository.java:174) ~[spring-batch-core-4.3.5.jar:4.3.5]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_121]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[?:1.8.0_121]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:1.8.0_121]
at java.lang.reflect.Method.invoke(Method.java:498) ~[?:1.8.0_121]
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:198) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123) ~[spring-tx-5.3.18.jar:5.3.18]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:388) ~[spring-tx-5.3.18.jar:5.3.18]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119) ~[spring-tx-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:215) ~[spring-aop-5.3.18.jar:5.3.18]
at com.sun.proxy.$Proxy113.update(Unknown Source) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_121]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[?:1.8.0_121]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:1.8.0_121]
at java.lang.reflect.Method.invoke(Method.java:498) ~[?:1.8.0_121]
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:198) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.batch.core.configuration.annotation.SimpleBatchConfiguration$PassthruAdvice.invoke(SimpleBatchConfiguration.java:128) ~[spring-batch-core-4.3.5.jar:4.3.5]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.18.jar:5.3.18]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:215) ~[spring-aop-5.3.18.jar:5.3.18]
at com.sun.proxy.$Proxy113.update(Unknown Source) ~[?:?]
at org.springframework.batch.core.job.AbstractJob.updateStatus(AbstractJob.java:443) ~[spring-batch-core-4.3.5.jar:4.3.5]
at org.springframework.batch.core.job.AbstractJob.execute(AbstractJob.java:315) [spring-batch-core-4.3.5.jar:4.3.5]
at org.springframework.batch.core.launch.support.SimpleJobLauncher$1.run(SimpleJobLauncher.java:149) [spring-batch-core-4.3.5.jar:4.3.5]
at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:50) [spring-core-5.3.18.jar:5.3.18]
at org.springframework.batch.core.launch.support.SimpleJobLauncher.run(SimpleJobLauncher.java:140) [spring-batch-core-4.3.5.jar:4.3.5]
Currently I am using spring boot - 2.5.12 and Spring batch - 4.3.5
Do I need to make manual entries in the spring batch tables?
Many thanks for your feedback !!

The schemas in the main branch are for the upcoming version v5, in which some columns have been removed/added, etc.
You need to use the DDL script with the same schema as your spring batch version (4.3.5) in your case:
https://github.com/spring-projects/spring-batch/blob/4.3.5/spring-batch-core/src/main/resources/org/springframework/batch/core/schema-oracle10g.sql

Setting Null Value For Column Using JPA

I have a requirement that says "update columns using modifying queries". This way I won't have to make a select statement in the database (Oracle), and it updates if, and only if, it finds a row with my where clause. However, I am not able to use null values in the update query. I don't want to worry about creating different queries and check in the service class if the value is null or not to call these different queries. The repository.save(entity) works just fine. I have more columns that can be null and they are saved as null. The COLUMN_1 (NUMBER) and COLUMN_2 (VARCHAR) I mention are NOT NULL.
Is there a way to work with #Modifying queries and null values and let NVL or any other SQL function decide which value it should use? The error specifically says the types I use are not the ones it expects. It seems like the null values are converted into BINARY OR VARBINARY.
I know I could do something like this using SQL and it works just fine:
UPDATE TABLE_NAME tb SET COLUMN_1 = nvl(:test, COLUMN_1) WHERE ID = 123456;
It is going to ignore the :test value if it is null and use the current column value. However, if I do the same using JPA an error occurs. The code:
#Modifying
#Query(value =
"UPDATE TABLE_NAME TB" +
"SET TB.COLUMN_1 = NVL(:column1, TB.COLUMN_1), " +
" TB.COLUMN_2 = NVL(:column2, TB.COLUMN_2) " +
"WHERE TB.ID= :id" +
" AND TB.CURRENT_RECORD = :mostRecentFlag ",
nativeQuery = true)
public int updateRow(Integer id, BigInteger column1, String column2, int mostRecentFlag);
JPA creates the update the right way:
UPDATE
TABLE_NAME TB
SET
TB.COLUMN_1 = NVL(?, TB.COLUMN_1),
TB.COLUMN_2 = NVL(?, TB.COLUMN_2)
WHERE
TB.ID= ?
AND TB.CURRENT_RECORD = ?
It also binds the values the right way:
binding parameter [1] as [BIGINT] - [52]
binding parameter [2] as [VARBINARY] - [null]
binding parameter [3] as [VARCHAR] - [username]
binding parameter [4] as [VARCHAR] - [123456]
binding parameter [5] as [INTEGER] - [1]
However, I always get an error no matter what. If the VARCHAR column is null:
12-01-2022 16:26:22.993 [] WARN o.h.e.jdbc.spi.SqlExceptionHelper.logExceptions:137 - SQL Error: 1465, SQLState: 72000
12-01-2022 16:26:22.993 [] ERROR o.h.e.jdbc.spi.SqlExceptionHelper.logExceptions:142 - ORA-01465: invalid hex number
But also for the NUMBER column:
12-01-2022 16:38:03.782 [] WARN o.h.e.jdbc.spi.SqlExceptionHelper.logExceptions:137 - SQL Error: 932, SQLState: 42000
12-01-2022 16:38:03.782 [] ERROR o.h.e.jdbc.spi.SqlExceptionHelper.logExceptions:142 - ORA-00932: inconsistent datatypes: expected BINARY got NUMBER
I have tried things like SpEL but it didn't work as well:
#Modifying
#Query(value =
"UPDATE TABLE_NAME TB" +
"SET TB.COLUMN_1 = NVL(:column1, TB.COLUMN_1), " +
" TB.COLUMN_2 = #{#column2?:'TB.COLUMN_2'} " +
"WHERE TB.ID= :id" +
" AND TB.CURRENT_RECORD = :mostRecentFlag ",
nativeQuery = true)
public int updateRow(Integer id, BigInteger column1, String column2, int mostRecentFlag);
It saved the literal TB.COLUMN_2 instead.
The whole stack error for the VARCHAR case:
org.springframework.orm.jpa.JpaSystemException: could not execute statement; nested exception is org.hibernate.exception.GenericJDBCException: could not execute statement
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.convertHibernateAccessException(HibernateJpaDialect.java:331) ~[spring-orm-5.3.14.jar:5.3.14]
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:233) ~[spring-orm-5.3.14.jar:5.3.14]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:551) ~[spring-orm-5.3.14.jar:5.3.14]
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfPossible(ChainedPersistenceExceptionTranslator.java:61) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:242) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:152) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:145) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:97) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:215) ~[spring-aop-5.3.14.jar:5.3.14]
at com.sun.proxy.$Proxy129.updateDevice(Unknown Source) ~[na:na]
...
Caused by: org.hibernate.exception.GenericJDBCException: could not execute statement
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.query.spi.NativeSQLQueryPlan.performExecuteUpdate(NativeSQLQueryPlan.java:107) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.internal.SessionImpl.executeNativeUpdate(SessionImpl.java:1549) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.query.internal.NativeQueryImpl.doExecuteUpdate(NativeQueryImpl.java:299) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.query.internal.AbstractProducedQuery.executeUpdate(AbstractProducedQuery.java:1696) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.springframework.data.jpa.repository.query.JpaQueryExecution$ModifyingExecution.doExecute(JpaQueryExecution.java:241) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:90) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:155) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:143) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.RepositoryMethodInvoker.doInvoke(RepositoryMethodInvoker.java:137) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.RepositoryMethodInvoker.invoke(RepositoryMethodInvoker.java:121) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.QueryExecutorMethodInterceptor.doInvoke(QueryExecutorMethodInterceptor.java:159) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.QueryExecutorMethodInterceptor.invoke(QueryExecutorMethodInterceptor.java:138) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:388) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:137) ~[spring-tx-5.3.14.jar:5.3.14]
... 38 common frames omitted
Caused by: java.sql.SQLException: ORA-01465: invalid hex number
at oracle.jdbc.driver.T4CTTIoer.processError(T4CTTIoer.java:450) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CTTIoer.processError(T4CTTIoer.java:399) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4C8Oall.processError(T4C8Oall.java:1059) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CTTIfun.receive(T4CTTIfun.java:522) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CTTIfun.doRPC(T4CTTIfun.java:257) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4C8Oall.doOALL(T4C8Oall.java:587) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CPreparedStatement.doOall8(T4CPreparedStatement.java:225) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CPreparedStatement.doOall8(T4CPreparedStatement.java:53) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CPreparedStatement.executeForRows(T4CPreparedStatement.java:943) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OracleStatement.doExecuteWithTimeout(OracleStatement.java:1150) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OraclePreparedStatement.executeInternal(OraclePreparedStatement.java:4798) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OraclePreparedStatement.executeUpdate(OraclePreparedStatement.java:4875) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OraclePreparedStatementWrapper.executeUpdate(OraclePreparedStatementWrapper.java:1361) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) ~[HikariCP-4.0.3.jar:na]
at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) ~[HikariCP-4.0.3.jar:na]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
... 56 common frames omitted
The whole stacktrace for the NUMBER case:
org.springframework.dao.InvalidDataAccessResourceUsageException: could not execute statement; SQL [n/a]; nested exception is org.hibernate.exception.SQLGrammarException: could not execute statement
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.convertHibernateAccessException(HibernateJpaDialect.java:259) ~[spring-orm-5.3.14.jar:5.3.14]
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:233) ~[spring-orm-5.3.14.jar:5.3.14]
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:551) ~[spring-orm-5.3.14.jar:5.3.14]
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfPossible(ChainedPersistenceExceptionTranslator.java:61) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:242) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:152) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:145) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:97) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:215) ~[spring-aop-5.3.14.jar:5.3.14]
at com.sun.proxy.$Proxy129.updateDevice(Unknown Source) ~[na:na]
Caused by: org.hibernate.exception.SQLGrammarException: could not execute statement
at org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert(SQLExceptionTypeDelegate.java:63) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:37) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.engine.query.spi.NativeSQLQueryPlan.performExecuteUpdate(NativeSQLQueryPlan.java:107) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.internal.SessionImpl.executeNativeUpdate(SessionImpl.java:1549) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.query.internal.NativeQueryImpl.doExecuteUpdate(NativeQueryImpl.java:299) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.hibernate.query.internal.AbstractProducedQuery.executeUpdate(AbstractProducedQuery.java:1696) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
at org.springframework.data.jpa.repository.query.JpaQueryExecution$ModifyingExecution.doExecute(JpaQueryExecution.java:241) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:90) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:155) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:143) ~[spring-data-jpa-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.RepositoryMethodInvoker.doInvoke(RepositoryMethodInvoker.java:137) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.RepositoryMethodInvoker.invoke(RepositoryMethodInvoker.java:121) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.QueryExecutorMethodInterceptor.doInvoke(QueryExecutorMethodInterceptor.java:159) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.data.repository.core.support.QueryExecutorMethodInterceptor.invoke(QueryExecutorMethodInterceptor.java:138) ~[spring-data-commons-2.6.0.jar:2.6.0]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:388) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119) ~[spring-tx-5.3.14.jar:5.3.14]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.14.jar:5.3.14]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:137) ~[spring-tx-5.3.14.jar:5.3.14]
... 38 common frames omitted
Caused by: java.sql.SQLSyntaxErrorException: ORA-00932: inconsistent datatypes: expected BINARY got NUMBER
at oracle.jdbc.driver.T4CTTIoer.processError(T4CTTIoer.java:450) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CTTIoer.processError(T4CTTIoer.java:399) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4C8Oall.processError(T4C8Oall.java:1059) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CTTIfun.receive(T4CTTIfun.java:522) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CTTIfun.doRPC(T4CTTIfun.java:257) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4C8Oall.doOALL(T4C8Oall.java:587) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CPreparedStatement.doOall8(T4CPreparedStatement.java:225) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CPreparedStatement.doOall8(T4CPreparedStatement.java:53) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.T4CPreparedStatement.executeForRows(T4CPreparedStatement.java:943) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OracleStatement.doExecuteWithTimeout(OracleStatement.java:1150) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OraclePreparedStatement.executeInternal(OraclePreparedStatement.java:4798) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OraclePreparedStatement.executeUpdate(OraclePreparedStatement.java:4875) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at oracle.jdbc.driver.OraclePreparedStatementWrapper.executeUpdate(OraclePreparedStatementWrapper.java:1361) ~[ojdbc7-12.1.0.2.jar:12.1.0.2.0]
at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) ~[HikariCP-4.0.3.jar:na]
at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) ~[HikariCP-4.0.3.jar:na]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ~[hibernate-core-5.6.3.Final.jar:5.6.3.Final]
... 56 common frames omitted
Spring version:
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
<version>2.6.2</version>
<relativePath /> <!-- lookup parent from repository -->
</parent>
EDIT
panagiotis-bougioukos suggested I should use case espression. Forgot to mention I already tried but it got the same error:
Caused by: java.sql.SQLSyntaxErrorException: ORA-00932: inconsistent datatypes: expected NUMBER got BINARY
Generated query
UPDATE
TABLE_NAME TB
SET
TB.COLUMN_1 = CASE
WHEN ? IS NULL THEN TB.COLUMN_1
ELSE ?
END,
TB.COLUMN_2 = NVL(?, TB.COLUMN_2)
WHERE
TB.ID= ?
AND TB.CURRENT_RECORD = ?

Operation timed out. Spring batch

I faced with problem on my local machine (When start in on server it is ok).
My config
spring.datasource.driver-class-name=org.postgresql.Driver
spring.datasource.hikari.validation-timeout=30000
spring.datasource.hikari.minimumIdle=50
spring.datasource.hikari.connectionTimeout=1800000
spring.datasource.hikari.idleTimeout=120000
spring.datasource.hikari.maxLifetime=300000
spring.task.execution.pool.keep-alive=1800000
spring.datasource.hikari.poolName=SpringBootJPAHikariCP
spring.datasource.type=com.zaxxer.hikari.HikariDataSource
spring.datasource.hikari.idle-timeout=120000
spring.datasource.hikari.connection-test-query=SELECT 1
spring.datasource.hikari.max-lifetime=300000
spring.jpa.properties.hibernate.dialect=org.hibernate.spatial.dialect.postgis.PostgisDialect
I tried different settings for connection pool. I thought this error related using another datasource for JobRepository, but he use is the same datasource. I tried annotation #Transactional
All logs
2021-02-27 15:56:24.106 WARN 68813 --- [ spring_batch56] com.zaxxer.hikari.pool.ProxyConnection : SpringBootJPAHikariCP - Connection org.postgresql.jdbc.PgConnection#5de66d55 marked as broken because of SQLSTATE(08006), ErrorCode(0)
org.postgresql.util.PSQLException: An I/O error occurred while sending to the backend.
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:350) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:473) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:393) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:164) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgPreparedStatement.executeUpdate(PgPreparedStatement.java:130) ~[postgresql-42.2.16.jar:42.2.16]
at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) ~[HikariCP-4.0.2.jar:na]
at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) ~[HikariCP-4.0.2.jar:na]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.dialect.identity.GetGeneratedKeysDelegate.executeAndExtract(GetGeneratedKeysDelegate.java:57) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.id.insert.AbstractReturningDelegate.performInsert(AbstractReturningDelegate.java:43) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:3153) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:3759) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.action.internal.EntityIdentityInsertAction.execute(EntityIdentityInsertAction.java:84) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.execute(ActionQueue.java:645) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.addResolvedEntityInsertAction(ActionQueue.java:282) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.addInsertAction(ActionQueue.java:263) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.addAction(ActionQueue.java:317) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.addInsertAction(AbstractSaveEventListener.java:330) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:287) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:193) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:123) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.DefaultPersistEventListener.entityIsTransient(DefaultPersistEventListener.java:185) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.DefaultPersistEventListener.onPersist(DefaultPersistEventListener.java:128) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.DefaultPersistEventListener.onPersist(DefaultPersistEventListener.java:55) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:102) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.internal.SessionImpl.firePersist(SessionImpl.java:721) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.internal.SessionImpl.persist(SessionImpl.java:707) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
Caused by: javax.net.ssl.SSLException: Operation timed out
at java.base/sun.security.ssl.Alert.createSSLException(Alert.java:127) ~[na:na]
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:325) ~[na:na]
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:268) ~[na:na]
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:263) ~[na:na]
at java.base/sun.security.ssl.SSLSocketImpl.handleException(SSLSocketImpl.java:1667) ~[na:na]
Suppressed: java.net.SocketException: Broken pipe
at java.base/sun.nio.ch.NioSocketImpl.implWrite(NioSocketImpl.java:420) ~[na:na]
at java.base/sun.nio.ch.NioSocketImpl.write(NioSocketImpl.java:440) ~[na:na]
at java.base/sun.nio.ch.NioSocketImpl$2.write(NioSocketImpl.java:826) ~[na:na]
at java.base/java.net.Socket$SocketOutputStream.write(Socket.java:1052) ~[na:na]
Caused by: java.net.SocketException: Operation timed out
at java.base/sun.nio.ch.NioSocketImpl.implRead(NioSocketImpl.java:325) ~[na:na]
at java.base/sun.nio.ch.NioSocketImpl.read(NioSocketImpl.java:350) ~[na:na]
at java.base/sun.nio.ch.NioSocketImpl$1.read(NioSocketImpl.java:803) ~[na:na]
at java.base/java.net.Socket$SocketInputStream.read(Socket.java:982) ~[na:na]
2021-02-27 15:56:24.113 WARN 68813 --- [ spring_batch56] o.h.engine.jdbc.spi.SqlExceptionHelper : SQL Error: 0, SQLState: 08006
2021-02-27 15:56:24.113 ERROR 68813 --- [ spring_batch56] o.h.engine.jdbc.spi.SqlExceptionHelper : An I/O error occurred while sending to the backend.
DB error: org.springframework.dao.DataAccessResourceFailureException: could not execute statement; nested exception is org.hibernate.exception.JDBCConnectionException: could not execute statement
2021-02-27 15:56:24.515 WARN 68813 --- [ spring_batch56] o.s.jdbc.support.SQLErrorCodesFactory : Error while extracting database name - falling back to empty error codes
org.springframework.jdbc.support.MetaDataAccessException: Error while extracting DatabaseMetaData; nested exception is java.sql.SQLException: Connection is closed
at org.springframework.jdbc.support.JdbcUtils.extractDatabaseMetaData(JdbcUtils.java:331) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.JdbcUtils.extractDatabaseMetaData(JdbcUtils.java:356) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.SQLErrorCodesFactory.getErrorCodes(SQLErrorCodesFactory.java:214) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.setDataSource(SQLErrorCodeSQLExceptionTranslator.java:136) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.<init>(SQLErrorCodeSQLExceptionTranslator.java:99) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.JdbcAccessor.getExceptionTranslator(JdbcAccessor.java:122) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.translateException(JdbcTemplate.java:1442) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:632) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:861) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:916) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcExecutionContextDao.persistSerializedContext(JdbcExecutionContextDao.java:236) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcExecutionContextDao.updateExecutionContext(JdbcExecutionContextDao.java:163) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.repository.support.SimpleJobRepository.updateExecutionContext(SimpleJobRepository.java:210) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
Caused by: java.sql.SQLException: Connection is closed
at com.zaxxer.hikari.pool.ProxyConnection$ClosedConnection.lambda$getClosedConnection$0(ProxyConnection.java:515) ~[HikariCP-4.0.2.jar:na]
at com.sun.proxy.$Proxy64.getMetaData(Unknown Source) ~[na:na]
at com.zaxxer.hikari.pool.ProxyConnection.getMetaData(ProxyConnection.java:380) ~[HikariCP-4.0.2.jar:na]
at com.zaxxer.hikari.pool.HikariProxyConnection.getMetaData(HikariProxyConnection.java) ~[HikariCP-4.0.2.jar:na]
at org.springframework.jdbc.support.JdbcUtils.extractDatabaseMetaData(JdbcUtils.java:320) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
... 40 common frames omitted
2021-02-27 15:56:24.519 ERROR 68813 --- [ spring_batch56] o.s.batch.core.step.tasklet.TaskletStep : JobRepository failure forcing rollback
org.springframework.jdbc.UncategorizedSQLException: PreparedStatementCallback; uncategorized SQLException for SQL [UPDATE BATCH_STEP_EXECUTION_CONTEXT SET SHORT_CONTEXT = ?, SERIALIZED_CONTEXT = ? WHERE STEP_EXECUTION_ID = ?]; SQL state [null]; error code [0]; Connection is closed; nested exception is java.sql.SQLException: Connection is closed
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:89) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:81) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:81) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.translateException(JdbcTemplate.java:1442) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:632) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:861) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:916) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcExecutionContextDao.persistSerializedContext(JdbcExecutionContextDao.java:236) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcExecutionContextDao.updateExecutionContext(JdbcExecutionContextDao.java:163) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.repository.support.SimpleJobRepository.updateExecutionContext(SimpleJobRepository.java:210) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
Caused by: java.sql.SQLException: Connection is closed
at com.zaxxer.hikari.pool.ProxyConnection$ClosedConnection.lambda$getClosedConnection$0(ProxyConnection.java:515) ~[HikariCP-4.0.2.jar:na]
at com.sun.proxy.$Proxy64.prepareStatement(Unknown Source) ~[na:na]
at com.zaxxer.hikari.pool.ProxyConnection.prepareStatement(ProxyConnection.java:337) ~[HikariCP-4.0.2.jar:na]
at com.zaxxer.hikari.pool.HikariProxyConnection.prepareStatement(HikariProxyConnection.java) ~[HikariCP-4.0.2.jar:na]
at org.springframework.jdbc.core.JdbcTemplate$SimplePreparedStatementCreator.createPreparedStatement(JdbcTemplate.java:1555) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:614) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
2021-02-27 15:56:24.529 INFO 68813 --- [ spring_batch56] o.s.batch.core.step.tasklet.TaskletStep : Commit failed while step execution data was already updated. Reverting to old version.
2021-02-27 15:56:24.530 ERROR 68813 --- [ spring_batch56] o.s.batch.core.step.tasklet.TaskletStep : Rolling back with transaction in unknown state
2021-02-27 15:56:24.531 ERROR 68813 --- [ spring_batch56] o.s.t.support.TransactionTemplate : Application exception overridden by rollback exception
org.springframework.batch.core.step.FatalStepExecutionException: JobRepository failure forcing rollback
at org.springframework.batch.core.step.tasklet.TaskletStep$ChunkTransactionCallback.doInTransaction(TaskletStep.java:464) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.step.tasklet.TaskletStep$ChunkTransactionCallback.doInTransaction(TaskletStep.java:331) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140) ~[spring-tx-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.batch.core.step.tasklet.TaskletStep$2.doInChunkContext(TaskletStep.java:273) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.scope.context.StepContextRepeatCallback.doInIteration(StepContextRepeatCallback.java:82) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.repeat.support.TaskExecutorRepeatTemplate$ExecutingRunnable.run(TaskExecutorRepeatTemplate.java:262) ~[spring-batch-infrastructure-4.1.2.RELEASE.jar:4.1.2.RELEASE]
at java.base/java.lang.Thread.run(Thread.java:832) ~[na:na]
Caused by: org.springframework.jdbc.UncategorizedSQLException: PreparedStatementCallback; uncategorized SQLException for SQL [UPDATE BATCH_STEP_EXECUTION_CONTEXT SET SHORT_CONTEXT = ?, SERIALIZED_CONTEXT = ? WHERE STEP_EXECUTION_ID = ?]; SQL state [null]; error code [0]; Connection is closed; nested exception is java.sql.SQLException: Connection is closed
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:89) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:81) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:81) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.translateException(JdbcTemplate.java:1442) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:632) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:861) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:916) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcExecutionContextDao.persistSerializedContext(JdbcExecutionContextDao.java:236) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcExecutionContextDao.updateExecutionContext(JdbcExecutionContextDao.java:163) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
at org.springframework.batch.core.repository.support.SimpleJobRepository.updateExecutionContext(SimpleJobRepository.java:210) ~[spring-batch-core-4.2.4.RELEASE.jar:4.2.4.RELEASE]
Caused by: java.sql.SQLException: Connection is closed
at com.zaxxer.hikari.pool.ProxyConnection$ClosedConnection.lambda$getClosedConnection$0(ProxyConnection.java:515) ~[HikariCP-4.0.2.jar:na]
at com.sun.proxy.$Proxy64.prepareStatement(Unknown Source) ~[na:na]
at com.zaxxer.hikari.pool.ProxyConnection.prepareStatement(ProxyConnection.java:337) ~[HikariCP-4.0.2.jar:na]
at com.zaxxer.hikari.pool.HikariProxyConnection.prepareStatement(HikariProxyConnection.java) ~[HikariCP-4.0.2.jar:na]
at org.springframework.jdbc.core.JdbcTemplate$SimplePreparedStatementCreator.createPreparedStatement(JdbcTemplate.java:1555) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:614) ~[spring-jdbc-5.1.6.RELEASE.jar:5.1.6.RELEASE]
2021-02-27 15:56:46.311 WARN 68813 --- [ spring_batch57] com.zaxxer.hikari.pool.ProxyConnection : SpringBootJPAHikariCP - Connection org.postgresql.jdbc.PgConnection#576cf81a marked as broken because of SQLSTATE(08006), ErrorCode(0)
org.postgresql.util.PSQLException: An I/O error occurred while sending to the backend.
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:350) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:473) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:393) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:164) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.jdbc.PgPreparedStatement.executeUpdate(PgPreparedStatement.java:130) ~[postgresql-42.2.16.jar:42.2.16]
at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) ~[HikariCP-4.0.2.jar:na]
at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) ~[HikariCP-4.0.2.jar:na]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.dialect.identity.GetGeneratedKeysDelegate.executeAndExtract(GetGeneratedKeysDelegate.java:57) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.id.insert.AbstractReturningDelegate.performInsert(AbstractReturningDelegate.java:43) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:3153) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:3759) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.action.internal.EntityIdentityInsertAction.execute(EntityIdentityInsertAction.java:84) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.execute(ActionQueue.java:645) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.addResolvedEntityInsertAction(ActionQueue.java:282) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.addInsertAction(ActionQueue.java:263) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.engine.spi.ActionQueue.addAction(ActionQueue.java:317) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.addInsertAction(AbstractSaveEventListener.java:330) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:287) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:193) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:123) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.DefaultPersistEventListener.entityIsTransient(DefaultPersistEventListener.java:185) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.DefaultPersistEventListener.onPersist(DefaultPersistEventListener.java:128) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.internal.DefaultPersistEventListener.onPersist(DefaultPersistEventListener.java:55) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:102) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.internal.SessionImpl.firePersist(SessionImpl.java:721) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at org.hibernate.internal.SessionImpl.persist(SessionImpl.java:707) ~[hibernate-core-5.4.21.Final.jar:5.4.21.Final]
at jdk.internal.reflect.GeneratedMethodAccessor71.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:564) ~[na:na]
at org.springframework.orm.jpa.SharedEntityManagerCreator$SharedEntityManagerInvocationHandler.invoke(SharedEntityManagerCreator.java:308) ~[spring-orm-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at com.sun.proxy.$Proxy107.persist(Unknown Source) ~[na:na]
at org.springframework.data.jpa.repository.support.SimpleJpaRepository.save(SimpleJpaRepository.java:489) ~[spring-data-jpa-2.1.6.RELEASE.jar:2.1.6.RELEASE]
at org.springframework.data.jpa.repository.support.SimpleJpaRepository.saveAll(SimpleJpaRepository.java:521) ~[spring-data-jpa-2.1.6.RELEASE.jar:2.1.6.RELEASE]
at jdk.internal.reflect.GeneratedMethodAccessor78.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:564) ~[na:na]
at org.springframework.data.repository.core.support.RepositoryComposition$RepositoryFragments.invoke(RepositoryComposition.java:359) ~[spring-data-commons-2.1.6.RELEASE.jar:2.1.6.RELEASE]
at org.springframework.data.repository.core.support.RepositoryComposition.invoke(RepositoryComposition.java:200) ~[spring-data-commons-2.1.6.RELEASE.jar:2.1.6.RELEASE]
at org.springframework.data.repository.core.support.RepositoryFactorySupport$ImplementationMethodExecutionInterceptor.invoke(RepositoryFactorySupport.java:644) ~[spring-data-commons-2.1.6.RELEASE.jar:2.1.6.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.1.6.RELEASE.jar:5.1.6.RELEASE]
Caused by: javax.net.ssl.SSLException: Operation timed out
at java.base/sun.security.ssl.Alert.createSSLException(Alert.java:127) ~[na:na]
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:325) ~[na:na]
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:268) ~[na:na]
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:263) ~[na:na]
at java.base/sun.security.ssl.SSLSocketImpl.handleException(SSLSocketImpl.java:1667) ~[na:na]
at java.base/sun.security.ssl.SSLSocketImpl$AppInputStream.read(SSLSocketImpl.java:1049) ~[na:na]
at org.postgresql.core.VisibleBufferedInputStream.readMore(VisibleBufferedInputStream.java:161) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.core.VisibleBufferedInputStream.ensureBytes(VisibleBufferedInputStream.java:128) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.core.VisibleBufferedInputStream.ensureBytes(VisibleBufferedInputStream.java:113) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.core.VisibleBufferedInputStream.read(VisibleBufferedInputStream.java:73) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.core.PGStream.receiveChar(PGStream.java:441) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2057) ~[postgresql-42.2.16.jar:42.2.16]
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:323) ~[postgresql-42.2.16.jar:42.2.16]
Caused by: java.net.SocketException: Operation timed out
at java.base/sun.nio.ch.NioSocketImpl.implRead(NioSocketImpl.java:325) ~[na:na]
at java.base/sun.nio.ch.NioSocketImpl.read(NioSocketImpl.java:350) ~[na:na]
at java.base/sun.nio.ch.NioSocketImpl$1.read(NioSocketImpl.java:803) ~[na:na]
at java.base/java.net.Socket$SocketInputStream.read(Socket.java:982) ~[na:na]
at java.base/sun.security.ssl.SSLSocketInputRecord.read(SSLSocketInputRecord.java:469) ~[na:na]
at java.base/sun.security.ssl.SSLSocketInputRecord.readHeader(SSLSocketInputRecord.java:463) ~[na:na]
at java.base/sun.security.ssl.SSLSocketInputRecord.bytesInCompletePacket(SSLSocketInputRecord.java:70) ~[na:na]
at java.base/sun.security.ssl.SSLSocketImpl.readApplicationRecord(SSLSocketImpl.java:1421) ~[na:na]
at java.base/sun.security.ssl.SSLSocketImpl$AppInputStream.read(SSLSocketImpl.java:1033) ~[na:na]
2021-02-27 15:57:49.892 ERROR 68813 --- [nio-8513-exec-2] o.s.batch.core.step.AbstractStep : Encountered an error saving batch meta data for step step8 in job UserJob. This job is now in an unknown state and should not be restarted.
org.springframework.transaction.TransactionSystemException: Could not roll back JPA transaction; nested exception is org.hibernate.TransactionException: Unable to rollback against JDBC Connection
at org.springframework.orm.jpa.JpaTransactionManager.doRollback(JpaTransactionManager.java:563) ~[spring-orm-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:838) ~[spring-tx-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:812) ~[spring-tx-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:551) ~[spring-tx-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:298) ~[spring-tx-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:98) ~[spring-tx-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:212) ~[spring-aop-5.1.6.RELEASE.jar:5.1.6.RELEASE]
at com.sun.proxy.$Proxy101.updateExecutionContext(Unknown Source) ~[na:na]
at jdk.internal.reflect.GeneratedMethodAccessor73.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:564) ~[na:na]
What should be done for JobRepository?

Java spring boot updating entity results in timeout and bugged entity

I have a Java/Spring application where I use websockets to synchronize data. I have multiple socket methods where I update certain entities. I also have an update method where I update an entity depending on the received data, like:
when I get field x I only update field x.
However, when I try to update a certain field, it crashes after a while with a PessimisticLockException where the timeout is exceeded. Increasing the timeout in phpyMyAdmin does not work because it will just try longer before crashing again.
Now the weird part is that after the application has crashed, the entity seems bugged in phpMyAdmin cause I can't update the specific field myself because I also get a timeout here. However, when I create a new entity in the database and update the field in phpMyAdmin myself before using the websocket, it does work and does not crash. I tried deleting and creating the database multiple times but always the same bug.
Does anyone else have experience with this issue and how can I resolve it? If possible, I could show the exact experience over Teamviewer etc. to get a better understanding of the problem. I checked the update query with trace debug but the data send is nothing weird.
Websocket method code:
#MessageMapping("/entity/update/{bordId}")
#SendTo("/entity/updated/{bordId}")
public Pair<BordRowItem, Integer> updateBordRowItem(String message) {
JSONObject object = new JSONObject(message);
EntityManager entityManager = entityManagerFactory.createEntityManager();
BordRowItem item;
ArrayList<BordRowItemEvent> events = new ArrayList<>();
Optional<BordRowItem> optionalBordRowItem = bordRowItemRepository.findById(object.getInt("id"));
if(!optionalBordRowItem.isPresent()) {
return null;
}
entityManager.getTransaction().begin();
item = optionalBordRowItem.get();
if(object.has("description")) {
String msg = (item.getDescription() != null && !item.getDescription().isEmpty()) ? " van '" + item.getDescription() + "'" : "";
BordRowItemEvent event = new BordRowItemEvent("changed" + msg + " to '" + object.getString("description") + "'");
event.setBordRowItem(item);
events.add(event);
item.setDescription(object.getString("description"));
}
for(BordRowItemEvent event : events) {
if (!ObjectUtils.isEmpty(event) && !entityManager.contains(event)) {
entityManager.persist(event);
entityManager.flush();
}
}
bordRowItemRepository.save(item);
entityManager.flush();
entityManager.getTransaction().commit();
entityManager.close();
return new Pair<>(item, item.getBordRow().getId());
Error:
org.springframework.dao.PessimisticLockingFailureException: could not execute statement; SQL [n/a]; nested exception is org.hibernate.PessimisticLockException: could not execute statement
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.convertHibernateAccessException(HibernateJpaDialect.java:292) ~[spring-orm-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:254) ~[spring-orm-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.orm.jpa.JpaTransactionManager.doCommit(JpaTransactionManager.java:537) ~[spring-orm-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:744) ~[spring-tx-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:712) ~[spring-tx-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:619) ~[spring-tx-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:372) ~[spring-tx-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:99) ~[spring-tx-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:139) ~[spring-tx-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:178) ~[spring-data-jpa-2.2.0.RELEASE.jar:2.2.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:93) ~[spring-aop-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:212) ~[spring-aop-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at com.sun.proxy.$Proxy130.save(Unknown Source) ~[na:na]
at com.project.project.project.controller.WebSocketController.updateBordRowItem(WebSocketController.java:348) ~[main/:na]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_181]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_181]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_181]
at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_181]
at org.springframework.messaging.handler.invocation.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:171) ~[spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.handler.invocation.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:120) ~[spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.handler.invocation.AbstractMethodMessageHandler.handleMatch(AbstractMethodMessageHandler.java:565) [spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.simp.annotation.support.SimpAnnotationMethodMessageHandler.handleMatch(SimpAnnotationMethodMessageHandler.java:511) [spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.simp.annotation.support.SimpAnnotationMethodMessageHandler.handleMatch(SimpAnnotationMethodMessageHandler.java:94) [spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.handler.invocation.AbstractMethodMessageHandler.handleMessageInternal(AbstractMethodMessageHandler.java:520) [spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.handler.invocation.AbstractMethodMessageHandler.handleMessage(AbstractMethodMessageHandler.java:454) [spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at org.springframework.messaging.support.ExecutorSubscribableChannel$SendTask.run(ExecutorSubscribableChannel.java:144) [spring-messaging-5.2.0.RELEASE.jar:5.2.0.RELEASE]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_181]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_181]
at java.lang.Thread.run(Thread.java:748) [na:1.8.0_181]
Caused by: org.hibernate.PessimisticLockException: could not execute statement
at org.hibernate.dialect.MySQLDialect$3.convert(MySQLDialect.java:536) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:3392) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.updateOrInsert(AbstractEntityPersister.java:3265) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:3666) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.action.internal.EntityUpdateAction.execute(EntityUpdateAction.java:149) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:604) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.spi.ActionQueue.lambda$executeActions$1(ActionQueue.java:478) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at java.util.LinkedHashMap.forEach(LinkedHashMap.java:684) ~[na:1.8.0_181]
at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:475) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:349) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:40) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:108) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1358) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.internal.SessionImpl.managedFlush(SessionImpl.java:436) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.internal.SessionImpl.flushBeforeTransactionCompletion(SessionImpl.java:3235) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.internal.SessionImpl.beforeTransactionCompletion(SessionImpl.java:2403) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.jdbc.internal.JdbcCoordinatorImpl.beforeTransactionCompletion(JdbcCoordinatorImpl.java:447) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl.beforeCompletionCallback(JdbcResourceLocalTransactionCoordinatorImpl.java:183) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl.access$300(JdbcResourceLocalTransactionCoordinatorImpl.java:40) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.commit(JdbcResourceLocalTransactionCoordinatorImpl.java:281) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.hibernate.engine.transaction.internal.TransactionImpl.commit(TransactionImpl.java:101) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
at org.springframework.orm.jpa.JpaTransactionManager.doCommit(JpaTransactionManager.java:533) ~[spring-orm-5.2.0.RELEASE.jar:5.2.0.RELEASE]
... 30 common frames omitted
Caused by: com.mysql.cj.jdbc.exceptions.MySQLTransactionRollbackException: Lock wait timeout exceeded; try restarting transaction
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:123) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:97) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.ClientPreparedStatement.executeInternal(ClientPreparedStatement.java:953) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1092) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1040) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.ClientPreparedStatement.executeLargeUpdate(ClientPreparedStatement.java:1347) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdate(ClientPreparedStatement.java:1025) ~[mysql-connector-java-8.0.18.jar:8.0.18]
at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) ~[HikariCP-3.4.1.jar:na]
at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) ~[HikariCP-3.4.1.jar:na]
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ~[hibernate-core-5.4.6.Final.jar:5.4.6.Final]
... 51 common frames omitted

Spring Data JPA query fails after 17 minutes on prod db but ok on test db

I have a very strange problem with a Spring Data JPA Repository interface method.
The method is quite simple:
List<Records> findByClientNameIgnoreCaseContainingAndRecordDateBetween (String client, Date startDate, Date endDate) throws DataAccessException;
This works perfectly fine on the test db, but on the production database the application starts to execute this query and then after 17 minutes it just throws this exception:
ERROR SqlExceptionHelper - Closed Connection: next
Here is the full stack trace:
12:17:53.728 [main] ERROR SpringApplication - Application startup failed
java.lang.IllegalStateException: Failed to execute CommandLineRunner
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:803)
at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:784)
at org.springframework.boot.SpringApplication.afterRefresh(SpringApplication.java:771)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:316)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1186)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1175)
at com.record.app.Application.main(Application.java:35)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50)
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:51)
Caused by: org.springframework.dao.DataAccessResourceFailureException: could not execute query; nested exception is org.hibernate.exception.JDBCConnectionException: could not execute query
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.convertHibernateAccessException(HibernateJpaDialect.java:257)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:244)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:491)
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfPossible(ChainedPersistenceExceptionTranslator.java:59)
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:213)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:147)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:133)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at $Proxy81.findByClientNameIgnoreCaseContainingAndRecordDateBetween(Unknown Source)
at com.record.app.reports.batchestransactions3.content.BatchAndTransactReportContentFactoryNewImpl.getTransactionsListByName(BatchAndTransactReportContentFactoryNewImpl.java:386)
at com.record.app.reports.batchestransactions3.content.BatchAndTransactReportContentFactoryNewImpl.findTransactionsByName(BatchAndTransactReportContentFactoryNewImpl.java:368)
at com.record.app.reports.batchestransactions3.content.BatchAndTransactReportContentFactoryNewImpl.prepareForCl(BatchAndTransactReportContentFactoryNewImpl.java:108)
at com.record.app.reportfactory.ClReportFactoryImpl.prepareFillAndCreate(ClReportFactoryImpl.java:78)
at com.record.app.service.DBReportProcessService.process(DBReportProcessService.java:62)
at com.record.app.builder.ReportBuilderImpl.startBuildingReport(ReportBuilderImpl.java:226)
at com.record.app.builder.ReportBuilderImpl.processReports(ReportBuilderImpl.java:119)
at com.record.app.builder.ReportBuilderImpl.buildReport(ReportBuilderImpl.java:93)
at com.record.app.ReportGenerator.run(ReportGenerator.java:61)
at com.record.app.Application.run(Application.java:41)
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:800)
... 14 common frames omitted
Caused by: org.hibernate.exception.JDBCConnectionException: could not execute query
at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:115)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:111)
at org.hibernate.loader.Loader.doList(Loader.java:2613)
at org.hibernate.loader.Loader.doList(Loader.java:2593)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2422)
at org.hibernate.loader.Loader.list(Loader.java:2417)
at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:501)
at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:371)
at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:216)
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1339)
at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87)
at org.hibernate.jpa.internal.QueryImpl.list(QueryImpl.java:606)
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:483)
at org.hibernate.jpa.criteria.compile.CriteriaQueryTypeQueryAdapter.getResultList(CriteriaQueryTypeQueryAdapter.java:50)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.orm.jpa.SharedEntityManagerCreator$DeferredQueryInvocationHandler.invoke(SharedEntityManagerCreator.java:372)
at $Proxy99.getResultList(Unknown Source)
at org.springframework.data.jpa.repository.query.JpaQueryExecution$CollectionExecution.doExecute(JpaQueryExecution.java:118)
at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:82)
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:116)
at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:106)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
... 32 common frames omitted
Caused by: java.sql.SQLRecoverableException: Closed Connection: next
at oracle.jdbc.driver.OracleResultSetImpl.next(OracleResultSetImpl.java:247)
at org.hibernate.loader.Loader.processResultSet(Loader.java:968)
at org.hibernate.loader.Loader.doQuery(Loader.java:930)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:336)
at org.hibernate.loader.Loader.doList(Loader.java:2610)
... 61 common frames omitted
One very interesting thing is that I have a removeAbandonedTimeout set for 30 seconds, and the application is still working for 17 minutes trying to execute the query.

Removing IgnoreCaseContaining from the repository query method solved the issue.