I'm getting the following error in JPackage using JDK-19 and JavaFX-19. Same configuration used to work using JDK-18 and JavaFX-16. It builds the install image, but is missing the msi installer.
Required environment variables:
PATH_TO_FX = C:\Java\javafx-19\sdk\lib
PATH_TO_FX_MODS = C:\Java\javafx-19\jmods
JPackage Version 19
[2022/11/12 10:46:54.801, jpackage.dll (PID: 5696, TID: 11192), jpackage.cpp:155 (Java_jdk_jpackage_internal_WinExeBundler_embedMSI)]
ERROR: Unknown exception caught
[10:45:03.636] Running candle.exe
[10:45:03.647] Running C:\Program Files (x86)\WiX Toolset v3.11\bin\candle.exe
[10:45:03.784] Running light.exe
[10:45:03.788] Running C:\Program Files (x86)\WiX Toolset v3.11\bin\light.exe
[10:45:03.989] Detected [candle.exe] version [3.11.2.4516].
[10:45:03.989] Detected [light.exe] version [3.11.2.4516].
[10:45:03.990] WiX 3.11.2.4516 detected. Enabling advanced cleanup action.
Any guidance or where I might get help is much appreciated.
Thank you
Unfortunately, I needed to replace my boot drive, which involved reinstalling Windows and WIX Toolkit and Java plus all the other stuff. The error no longer occurs. I have no idea what fixed it, the new SSD is built the same as the old with the same versions of all software. There is not a software migration history on the new SSD as there was on the old HD. I'm using the same procedures as before.
I hate when we fix things and not know why, but such is life.
Related
Problem:
I'm trying to install tensorflow-amd and one of the dependencies is bazel. On installation of bazel I get the following error message:
[miner-ms7a59 Downloads]# sudo pacman -S bazel
resolving dependencies...
looking for conflicting packages...
Packages (7) jdk11-openjdk-11.0.16.1.u1-2 jre11-openjdk-11.0.16.1.u1-2 jre11-openjdk-headless-11.0.16.1.u1-2 libnet-1:1.1.6-1 unzip-6.0-19 zip-3.0-10
bazel-5.2.0-1
Total Installed Size: 382.41 MiB
:: Proceed with installation? [Y/n]
(7/7) checking keys in keyring [#######################################################] 100%
(7/7) checking package integrity [#######################################################] 100%
(7/7) loading package files [#######################################################] 100%
(7/7) checking for file conflicts [#######################################################] 100%
(7/7) checking available disk space [#######################################################] 100%
:: Processing package changes...
(1/7) installing libnet [#######################################################] 100%
(2/7) installing jre11-openjdk-headless [#######################################################] 100%
Optional dependencies for jre11-openjdk-headless
java-rhino: for some JavaScript support
(3/7) installing jre11-openjdk [#######################################################] 100%
when you use a non-reparenting window manager,
set _JAVA_AWT_WM_NONREPARENTING=1 in /etc/profile.d/jre.sh
Optional dependencies for jre11-openjdk
alsa-lib: for basic sound support [installed]
gtk2: for the Gtk+ 2 look and feel - desktop usage [installed]
gtk3: for the Gtk+ 3 look and feel - desktop usage [installed]
(4/7) installing jdk11-openjdk [#######################################################] 100%
(5/7) installing zip [#######################################################] 100%
(6/7) installing unzip [#######################################################] 100%
(7/7) installing bazel [#######################################################] 100%
:: Running post-transaction hooks...
(1/4) Arming ConditionNeedsUpdate...
(2/4) Refreshing PackageKit...
(3/4) Updating icon theme caches...
(4/4) Updating the desktop file MIME type cache...
[miner-ms7a59 Downloads]# bazel --version
bazel 5.2.0
[miner-ms7a59 Downloads]# bazel
WARNING: Invoking Bazel in batch mode since it is not invoked from within a workspace (below a directory having a WORKSPACE file).
Extracting Bazel installation...
FATAL: bazel crashed due to an internal error. Printing stack trace:
java.lang.ExceptionInInitializerError
at com.google.devtools.build.lib.skyframe.SkyframeExecutor.<clinit>(SkyframeExecutor.java:373)
at com.google.devtools.build.lib.skyframe.BazelSkyframeExecutorConstants.newBazelSkyframeExecutorBuilder(BazelSkyframeExecutorConstants.java:63)
at com.google.devtools.build.lib.skyframe.SequencedSkyframeExecutorFactory.create(SequencedSkyframeExecutorFactory.java:43)
at com.google.devtools.build.lib.runtime.WorkspaceBuilder.build(WorkspaceBuilder.java:73)
at com.google.devtools.build.lib.runtime.BlazeRuntime.initWorkspace(BlazeRuntime.java:265)
at com.google.devtools.build.lib.runtime.BlazeRuntime.newRuntime(BlazeRuntime.java:1316)
at com.google.devtools.build.lib.runtime.BlazeRuntime.batchMain(BlazeRuntime.java:925)
at com.google.devtools.build.lib.runtime.BlazeRuntime.main(BlazeRuntime.java:762)
at com.google.devtools.build.lib.bazel.Bazel.main(Bazel.java:87)
Caused by: java.lang.NullPointerException
at java.base/jdk.internal.platform.cgroupv2.CgroupV2Subsystem.getInstance(CgroupV2Subsystem.java:81)
at java.base/jdk.internal.platform.CgroupSubsystemFactory.create(CgroupSubsystemFactory.java:113)
at java.base/jdk.internal.platform.CgroupMetrics.getInstance(CgroupMetrics.java:167)
at java.base/jdk.internal.platform.SystemMetrics.instance(SystemMetrics.java:29)
at java.base/jdk.internal.platform.Metrics.systemMetrics(Metrics.java:58)
at java.base/jdk.internal.platform.Container.metrics(Container.java:43)
at jdk.management/com.sun.management.internal.OperatingSystemImpl.<init>(OperatingSystemImpl.java:182)
at jdk.management/com.sun.management.internal.PlatformMBeanProviderImpl.getOperatingSystemMXBean(PlatformMBeanProviderImpl.java:281)
at jdk.management/com.sun.management.internal.PlatformMBeanProviderImpl$3.nameToMBeanMap(PlatformMBeanProviderImpl.java:198)
at java.management/sun.management.spi.PlatformMBeanProvider$PlatformComponent.getMBeans(PlatformMBeanProvider.java:195)
at java.management/java.lang.management.ManagementFactory.getPlatformMXBean(ManagementFactory.java:686)
at java.management/java.lang.management.ManagementFactory.getOperatingSystemMXBean(ManagementFactory.java:388)
at com.google.devtools.build.lib.util.ResourceUsage.<clinit>(ResourceUsage.java:42)
... 9 more
[miner-ms7a59 Downloads]#
Building bazel with the git repository with yay didn't really help much either, since it gave the same error message in the middle of the build. A lot of other stackoverflow questions trail off into either the java version or the linux version, even though the java version I'm running right now is openjdk 11.0.16.1 2022-08-12 and I dont have any other jdk installed other than jdk11-openjdk 11.0.16.1.u1-2, jre11-openjdk 11.0.16.1.u1-2, jre11-openjdk-headless 11.0.16.1.u1-2 (given by pacman -Q | grep jdk)
Getting this error message whenever I am trying to compile a plugin filter. Not sure what is causing that.
ImageJ 1.53a; Java 1.8.0_172 [64-bit]; Mac OS X 10.15.7; 33MB of 3000MB (1%)
warning: [options] bootstrap class path not set in conjunction with -source 1.6
/private/var/folders/nm/nftqfvnn4_7c87p06n3qztl00000gn/T/AppTranslocation/071310B3-FF74-405F-B175-3C92927EC9DB/d/ImageJ.app/plugins/Filters/Filter_Plugin.java:9: error: error while writing Filter_Plugin: /private/var/folders/nm/nftqfvnn4_7c87p06n3qztl00000gn/T/AppTranslocation/071310B3-FF74-405F-B175-3C92927EC9DB/d/ImageJ.app/plugins/Filters/Filter_Plugin.class (Read-only file system)
public class Filter_Plugin implements PlugInFilter {
^
1 error
1 warning
This is likely caused by the Path Randomization feature in Mac OSX (maybe because you're running ImageJ from within a mounted dmg file?).
See also this topic on the Image.sc forum:
https://forum.image.sc/t/imagej-stopped-working-when-we-upgraded-to-macos-sierra-10-12/3005/7?u=imagejan
Quoting from there:
You can disable path randomization by moving ImageJ.app out of the ImageJ folder and then copying it back.
In general, issues with ImageJ (both usage and development) are best discussed on https://forum.image.sc/tag/imagej.
I've followed about every tutorial I could find, but somehow I can't seem to get Nd4j to work with a Cuda backend. I think I'm missing a library, but I can't figure out which one or where to download it.
The error I'm getting is:
18:23:23.872 [main] WARN org.nd4j.linalg.factory.Nd4jBackend - Skipped [JCublasBackend] backend (unavailable): java.lang.UnsatisfiedLinkError: no cudart in java.library.path
18:23:23.958 [main] INFO org.nd4j.linalg.factory.Nd4jBackend - Loaded [CpuBackend] backend
I'm using Nd4j and I have (amongst a whole bunch of others) the following jars on my class path:
nd4j-native-1.0.0-beta3.jar
nd4j-native-api-1.0.0-beta3.jar
cuda-10.0-7.3-1.4.3.jar
nd4j-cuda-10.0-1.0.0-beta3.jar.
Cuda 10.0 is successfully installed:
C:\Users\username>nvcc -V
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2018 NVIDIA Corporation
Built on Sat_Aug_25_21:08:04_Central_Daylight_Time_2018
Cuda compilation tools, release 10.0, V10.0.130
I tried to point Java to the Cuda bin directory like so:
-Djava.library.path="C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v10.0\bin"
but that makes no difference. Furthermore, I've tried the mvn command on the pom.xml's inside nd4j-cuda-10.0-platform-1.0.0-beta3.jar and cuda-platform-10.0-7.3-1.4.3.jar, which results in a download of a lot of jars, but none of them appear to contain the dll I'm missing.
When searching around I found other users talking about jars like 'cuda-10.0-7.3-1.4.3-windows-x86_64.jar' that should contain a jnicudart.dll, but I can't find such a jar anywhere. What am I missing here?
--UPDATE--
I've updated everything to beta5, and found a cuda jar containing the missing jnicudart.dll, but I still get the same error. I have used Dependencies to check what's wrong, and this is the result:
It says the checksum of the NVidia cudart64_100.dll is incorrect. Would this be related to NVidia Cuda10 not supporting my Geforce GT 730 because it is a Fermi architecture? Or is the cuda installation corrupt or something?
please update your nd4j/dl4j version to 1.0.0-beta5
please tell me, what’s your GPU model name and nvidia driver version? i.e. show nvidia-smi output.
OK I figured it out; had to install Cuda8.0 and revert all Nd4j to beta2, and add the correct cuda-8.9-6.0-1.4.1-windows-x86_64.jar to my classpath. Furthermore, I had to restart my IDE for the windows PATH environment to be updated so that the CUDA 8 bin directory was in it. And then I found out that
CUDA backend requires compute capatibility of 3.0 and above to run
and my retro card was only 2.1, so all was for nothing :/
Will have to purchase a new GPU I guess...
I recently upgraded my MacOSX system to Catalina and several files were placed automatically into "Relocated items" folder on my Desktop. I recently tried to run the following code which had previously worked:
qualimap bamqc -bam Sample1_sorted.bam -c -outdir QualiMap/Sample1_sorted
and received the following error:
Java HotSpot(TM) 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
Error: Unable to initialize main class org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain
Caused by: java.lang.NoClassDefFoundError: org/apache/commons/cli/ParseException
I have seen many other posts related to this error but am unsure how to even go about trying some of the suggested solutions. I do not work directly with some of the applications/files mentioned in these forums, such as JAVA, Maven, AppAssembler, and the pom.xml file (I could not even find that file). As a result, I wished to ask about this error from the perspective of a biologist using qualimap.
How can I fix this error (with little knowledge of the above applications/files)? I can certainly work with these applications/files, but I would probably need more detailed/basic/low-level advice on how to access and modify them. Thank you!
It seems what qualimap is a java application someone else wrote. I would raise a ticket with whomever wrote this app.
Hi I'm trying to install this tool 'Sean Corfield's scripting for ColdFusion project.' on my server - problem is I am getting "Class not found: com.caucho.quercus.script.QuercusScriptEngineFactory " errors, I have java 1.6 installed.... I'm not sure how where to get these extra classes ... any help?
[opensuse 11 system, CF8 java 1.6]
-thanks
-sean
Did you follow the installation instructions for the cfphp, as per the "example.cfm" page:
Installation:
1. Copy lib/quercus.jar and lib/resin-util.jar to WEB-INF/cfusion/lib/
(multiserver) or coldfusion8/lib (standalone)
2. Restart ColdFusion 8.
3. Optionally copy customtags/php.cfm into your custom tags path.
The important thing is that the quercus.jar is accessible to the JVM. Your error message indicates that the JVM can't find the jar.