I am trying to convert my below xml to java object.
This is my xml:
<ClinicalDocument xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="urn:hl7-org:v3" xmlns:sdtc="urn:hl7-org:sdtc" xmlns:voc="urn:hl7-org:v3/voc">
<confidentialityCode code="" codeSystem=""/>
<languageCode code="en-"/>
<recordTarget>
<patientRole>
<id root="" extension=""/>
<telecom value="" use=""/>
<providerOrganization>
<id root="" extension=""/>
<id root="" extension=""/>
<name>Something</name>
<telecom value=""/>
<addr use="">
<state></state>
<city></city>
<postalCode></postalCode>
<streetAddressLine>2121</streetAddressLine>
</addr>
</providerOrganization>
</patientRole>
</recordTarget>
</ClinicalDocument>
I need to get the value of "name" under "providerOrganization".
Below are my Java classes.
ClinicalDocument.java
package com.biclinical.data;
import java.util.List;
import javax.xml.bind.annotation.*;
#XmlAccessorType(XmlAccessType.FIELD)
#XmlRootElement(name="ClinicalDocument", namespace="urn:hl7-org:v3")
public class ClinicalDocument {
#XmlElement(name="recordTarget")
private List<RecordTarget> recordTarget;
public List<RecordTarget> getRecordTarget() {
return recordTarget;
}
public void setRecordTarget(List<RecordTarget> recordTarget) {
this.recordTarget = recordTarget;
}
#Override
public String toString() {
return "ClinicalDocument [recordTarget=" + recordTarget + "]";
}
}
RecordTarget.java
package com.biclinical.data;
import java.util.List;
import javax.xml.bind.annotation.*;
#XmlAccessorType(XmlAccessType.FIELD)
#XmlRootElement(name="recordTarget")
public class RecordTarget {
#XmlElement(name="patientRole")
private List<PatientRole> patientRole;
public List<PatientRole> getPatientRole() {
return patientRole;
}
public void setPatientRole(List<PatientRole> patientRole) {
this.patientRole = patientRole;
}
#Override
public String toString() {
return "RecordTarget [patientRole=" + patientRole +"]";
}
}
PatientRole.java
package com.biclinical.data;
import java.util.List;
import javax.xml.bind.annotation.*;
#XmlAccessorType(XmlAccessType.FIELD)
#XmlRootElement(name = "patientRole")
public class PatientRole {
/*#XmlElement(name = "id")
private String id;
Double root;
String extension;*/
#XmlElement(name="providerOrganization")
private List<ProviderOrganization> providerOrganization;
public List<ProviderOrganization> getProviderOrganization() {
return providerOrganization;
}
public void setProviderOrganization(List<ProviderOrganization> providerOrganization) {
this.providerOrganization = providerOrganization;
}
}
ProviderOrganisation.java
package com.biclinical.data;
import javax.xml.bind.annotation.*;
#XmlAccessorType(XmlAccessType.FIELD)
#XmlRootElement(name="providerOrganization")
public class ProviderOrganization {
#XmlElement(name="name")
private String name;
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
#Override
public String toString() {
return "Patient [Name=" + name + "]";
}
}
XMLFileParserSAXUtility.java
public class XMLFileParserSAXUtility extends DefaultHandler {
public static void main(String[] args) {
try {
File file = new File("C:/Users/shivendras/Desktop/Patient19999_Test_Organization1.xml");
JAXBContext jaxbContext = JAXBContext.newInstance(new Class[] {ClinicalDocument.class,RecordTarget.class,PatientRole.class,ProviderOrganization.class});
Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
ClinicalDocument clinicalDocument = (ClinicalDocument) jaxbUnmarshaller.unmarshal(file);
//clinicalDocument.getRecordTarget()
String s = ((File) ((PatientRole) ((RecordTarget) clinicalDocument.getRecordTarget()).getPatientRole()).getProviderOrganization()).getName();
System.out.println(s);
} catch (JAXBException e) {
e.printStackTrace();
}
}
I get the result as
Exception in thread "main" java.lang.NullPointerException
at com.biclinical.util.XMLFileParserSAXUtility.main(XMLFileParserSAXUtility.java:27)
And if i try to print syso(clinicalDocument);
Result is ClinicalDocument [recordTarget=null]
Please help me out here!
I think you add the namespace to your #XmlElement :
#XmlElement(name="patientRole")
private List<PatientRole> patientRole;
Should be :
#XmlElement(name="patientRole",namespace="urn:hl7-org:v3")
private List<PatientRole> patientRole;
If you're having any other null in your objects, try adding the namespace.
Also, #XmlRootEntity is only necessary for your root element, in this case your ClinicalDocumentclass, and you only need to give the root class to your JAXBContext :
JAXBContext jaxbContext = JAXBContext.newInstance(ClinicalDocument.class);
Related
I am trying to convert the below XML string to a Java object using JAXB and eclipse persistence oxm annotations package.
<output>
<rtEvent>
<eventData name="tcppayload">
<data>111111-000000-111111</data>
</eventData>
<eventData name="text">
<data>ABCD</data>
</eventData>
</rtEvent>
</output>
However, the de-serialization does not seem to work. Can someone point out what I might be doing wrong.
Below is the class i'm using to deserialize the string into an object
#XmlRootElement(name = "output")
#XmlAccessorType(XmlAccessType.FIELD)
public class CameraTriggerOutput {
#XmlPath("/rtEvent/eventData[#name=tcppayload]/data/text()")
private String data;
public void toXml() {
try {
JAXBContext ctx = JAXBContext.newInstance(CameraTriggerOutput.class);
Marshaller marshaller = ctx.createMarshaller();
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
marshaller.marshal(this, System.out);
}
catch (Exception ex) {
ex.printStackTrace();
}
}
}
After running I get the following output
<?xml version="1.0" encoding="UTF-8" standalone="yes"?><output/>
I provide below the code with pure Jaxb, you can try.
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
#XmlRootElement(name = "eventData")
public class EventData {
private String name;
private String data;
#XmlElement(name = "data")
public String getData() {
return data;
}
public void setData(String data) {
this.data = data;
}
#XmlAttribute(name = "name")
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
}
import java.util.List;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
#XmlRootElement(name = "rtEvent")
public class RtEvent {
private List<EventData> edataList;
#XmlElement(name = "eventData")
public List<EventData> getEdataList() {
return edataList;
}
public void setEdataList(List<EventData> edataList) {
this.edataList = edataList;
}
}
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.Marshaller;
import javax.xml.bind.annotation.XmlRootElement;
#XmlRootElement(name = "output")
public class Output {
private RtEvent rtEvent;
public RtEvent getRtEvent() {
return rtEvent;
}
public void setRtEvent(RtEvent rtEvent) {
this.rtEvent = rtEvent;
}
public static void main(String[] args) {
try {
EventData eData1 = new EventData();
eData1.setData("111111-000000-111111");
eData1.setName("tcppayload");
EventData eData2 = new EventData();
eData2.setData("ABCD");
eData2.setName("text");
List<EventData> eDataList = new ArrayList<>();
eDataList.add(eData1);
eDataList.add(eData2);
RtEvent rtEvent = new RtEvent();
rtEvent.setEdataList(eDataList);
Output output = new Output();
output.setRtEvent(rtEvent);
JAXBContext ctx = JAXBContext.newInstance(Output.class);
Marshaller marshaller = ctx.createMarshaller();
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
marshaller.marshal(output, System.out);
} catch (Exception ex) {
ex.printStackTrace();
}
}
}
You Jaxb only as it is part of java, there is no need to include any other annotations. You can make individual classes in your ide and you can test the class Output which has a main method.
I've got an issue with nested lists & was hoping someone could help.I would like to unmarshal the list in the below XML. I was hoping someone could point me in the right direction, I believe me annotations are off. When I try and unmarshall the MyList array it's returned null.
I have an XML:
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<root>
<myList>
<name>N1</name>
<type>T1</type>
<version>V1</version>
</myList>
<myList>
<name>N2</name>
<type>T2</type>
<version>V2</version>
</myList>
</root>
MyList object:
#XmlRootElement(name = "myList")
#XmlAccessorType(XmlAccessType.FIELD)
public class MyList {
#XmlValue
private String name;
#XmlValue
private String type;
#XmlValue
private String version;
Root Class:
#XmlAccessorType(XmlAccessType.FIELD)
#XmlRootElement
public class Root {
#XmlElementWrapper(name="myLists")
#XmlElement(name="myList")
private List<MyList> list = new ArrayList<MyList>();
Any help would be much appreciated.
The #XmlValue are wrong. In addition, the #XmlElementWrapper is wrong if the myList elements are not wrapped.
Try this, it works for me.
Root.java
package de.lhorn.so;
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
#XmlAccessorType(XmlAccessType.FIELD)
#XmlRootElement(name = "root")
public class Root {
#XmlElement(name = "myList")
private List<MyList> list = new ArrayList<>();
public Root() {
}
public List<MyList> getList() {
return list;
}
public void setList(List<MyList> list) {
this.list = list;
}
#Override
public String toString() {
return "Root{" + "list=" + list + '}';
}
}
MyList.java
package de.lhorn.so;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlRootElement;
#XmlRootElement(name = "myList")
#XmlAccessorType(XmlAccessType.FIELD)
public class MyList {
private String name;
private String type;
private String version;
public MyList() {
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public String getVersion() {
return version;
}
public void setVersion(String version) {
this.version = version;
}
#Override
public String toString() {
return "MyList{" + "name=" + name + ", type=" + type + ", version=" + version + '}';
}
}
Main
InputStream is = SOPlayground.class.getResourceAsStream("root.xml");
JAXBContext jaxbContext = JAXBContext.newInstance(Root.class);
Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
Root root = (Root) jaxbUnmarshaller.unmarshal(is);
System.out.println(root);
Output
Root{list=[MyList{name=N1, type=T1, version=V1}, MyList{name=N2, type=T2, version=V2}]}
try this, It should work.
#XmlRootElement(name = "root")
#XmlAccessorType (XmlAccessType.FIELD)
public class Root {
#XmlElement(name="myList")
private List<MyList> list = new ArrayList<MyList>();
}
unmarshal
JAXBContext jaxbContext = JAXBContext.newInstance(Root.class);
Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
//We had written this file in marshalling example
Root root= (Root) jaxbUnmarshaller.unmarshal( new File("c:/foo.xml") );
List<MyList> myLists = root.getList();
This is gonna be lengthy but I need some enlightenment. I'm new to JAXB so please be lenient with me.
CourseApp:
package Courses;
import java.io.File;
import java.util.ArrayList;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBException;
import javax.xml.bind.Marshaller;
public class CoursesApp {
public static void main(String[] args) {
Courselist courselist = new Courselist();
courselist.setclassType("Lecture");
courselist.setcourseCode("2002");
courselist.setgroupIndex("1");
courselist.setprofessor("Professor James");
try{
File file = new File("C:\\Courselist.xml");
JAXBContext jaxbContext = JAXBContext.newInstance(Courselist.class);
Marshaller jaxbMarshaller = jaxbContext.createMarshaller();
jaxbMarshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
jaxbMarshaller.marshal(courselist, file);
jaxbMarshaller.marshal(courselist, System.out);
}catch(JAXBException e)
{
e.printStackTrace();
}
}
}
Courselist:
package Courses;
import java.util.List;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlRootElement;
#XmlRootElement
public class Courselist {
String courseCode;
String classType;
String groupIndex;
String professor;
public String getcourseCode() {
return courseCode;
}
#XmlElement
public void setcourseCode(String courseCode) {
this.courseCode = courseCode;
}
public String getclassType() {
return classType;
}
#XmlElement
public void setclassType(String classType) {
this.classType = classType;
}
public String getgroupIndex() {
return groupIndex;
}
#XmlElement
public void setgroupIndex(String groupIndex) {
this.groupIndex = groupIndex;
}
public String getprofessor() {
return professor;
}
#XmlElement
public void setprofessor(String professor) {
this.professor = professor;
}
}
Output:
<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
- <courselist>
<classType>Lecture</classType>
<courseCode>2002</courseCode>
<groupIndex>1</groupIndex>
<professor>Professor James</professor>
</courselist>
What I want is to create another instance of courselist within the same XML:
<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
- <courselist>
-<course>
<classType>Lecture</classType>
<courseCode>2002</courseCode>
<groupIndex>1</groupIndex>
<professor>Professor James</professor>
</course>
-<course>
<classType>Lecture</classType>
<courseCode>2003</courseCode>
<groupIndex>2</groupIndex>
<professor>Professor John</professor>
</course>
</courselist>
I would recommend to have one member in CourseList: List<Course> when Course will include all the members currently in CourseList.
This is the code:
#XmlRootElement
public class Courselist {
#XmlElement List<Course> course = new ArrayList<Course>();
}
Courselist
As oshai answered I would have a model with two classes Courselist and Course. Below is what the Courselist class would look like. To match Java programming conventions the package name is normally lower case. Also it is also often based on a domain name (such as com.example.courses). By default JAXB (JSR-222) implementations look for metadata on the property (get or set methods) so I've put them there (see: http://blog.bdoughan.com/2011/06/using-jaxbs-xmlaccessortype-to.html).
package courses;
import java.util.List;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
#XmlRootElement
public class Courselist {
List<Course> courses;
#XmlElement(name="course")
public List<Course> getCourses() {
return courses;
}
public void setCourses(List<Course> courses) {
this.courses = courses;
}
}
Course
The information you had in the Courselist class I have moved to a new Course class. JAXB is configuration by exception so you only need to add annotations where you wish the XML representation to differ from the default. In your use case you don't need any annotations on this class (see: http://blog.bdoughan.com/2012/07/jaxb-no-annotations-required.html). I have fixed the casing on your property methods to match the normal Java coding conventions.
package courses;
public class Course {
String courseCode;
String classType;
String groupIndex;
String professor;
public String getCourseCode() {
return courseCode;
}
public void setCourseCode(String courseCode) {
this.courseCode = courseCode;
}
public String getClassType() {
return classType;
}
public void setClassType(String classType) {
this.classType = classType;
}
public String getGroupIndex() {
return groupIndex;
}
public void setGroupIndex(String groupIndex) {
this.groupIndex = groupIndex;
}
public String getProfessor() {
return professor;
}
public void setProfessor(String professor) {
this.professor = professor;
}
}
I have the following construction:
#XMLTransient
public abstract class Foo {
protected String name;
}
#XmlRootElement
#XmlType(propOrder={"name"})
public class BarX extends Foo {
public String getXThing() {
return name;
}
public void setXThing(String thing) {
name = thing;
}
}
#XmlRootElement
#XmlType(propOrder={"name"})
public class BarY extends Foo {
public String getYBlah() {
return name;
}
public void setYBlah(String blah) {
name = blah;
}
}
Within the XML I need for BarX instead of name the tag thing and for BarY I would like to have blah instead of name. Is it possible and how I can get this?
You can do the following (you were already pretty close):
Foo
package forum11340316;
import javax.xml.bind.annotation.XmlTransient;
#XmlTransient
public abstract class Foo {
protected String name;
}
BarX
package forum11340316;
import javax.xml.bind.annotation.*;
#XmlRootElement
#XmlType(propOrder={"XThing"})
public class BarX extends Foo {
#XmlElement(name="thing")
public String getXThing() {
return name;
}
public void setXThing(String thing) {
name = thing;
}
}
BarY
package forum11340316;
import javax.xml.bind.annotation.*;
#XmlRootElement
#XmlType(propOrder={"YBlah"})
public class BarY extends Foo {
#XmlElement(name="blah")
public String getYBlah() {
return name;
}
public void setYBlah(String blah) {
name = blah;
}
}
Demo
package forum11340316;
import javax.xml.bind.*;
public class Demo {
public static void main(String[] args) throws Exception {
JAXBContext jc = JAXBContext.newInstance(BarX.class, BarY.class);
Marshaller marshaller = jc.createMarshaller();
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
BarX barX = new BarX();
barX.setXThing("XThing");
marshaller.marshal(barX, System.out);
BarY barY = new BarY();
barY.setYBlah("YBlah");
marshaller.marshal(barY, System.out);
}
}
Output
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<barX>
<thing>XThing</thing>
</barX>
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<barY>
<blah>YBlah</blah>
</barY>
For More Information
http://blog.bdoughan.com/2011/06/ignoring-inheritance-with-xmltransient.html
http://blog.bdoughan.com/2011/06/using-jaxbs-xmlaccessortype-to.html
There's ugly XML file that has to be unmarshalled:
<?xml version="1.0" ?>
<configuration>
<section name="default_options">
<value name="default_port">8081</value>
<value name="log_level">WARNING</value>
</section>
<section name="custom_options">
<value name="memory">64M</value>
<value name="compatibility">yes</value>
</section>
</configuration>
Resulting Java Objects should be:
public class DefaultOptions {
private int defaultPort;
private String logLevel;
// etc...
}
public class CustomOptions {
private String memory;
private String compatibility;
// etc...
}
This question's answer is very close but I can't figure out the final solution.
How about?
Introduce a common super class called Options:
import javax.xml.bind.annotation.XmlAttribute;
public abstract class Options {
private String name;
#XmlAttribute
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
}
Then on your class with the list of options (Configuration in this example), specify an #XmlJavaTypeAdapter on that property:
import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
#XmlRootElement
public class Configuration {
private List<Options> section = new ArrayList<Options>();
#XmlJavaTypeAdapter(OptionsAdapter.class)
public List<Options> getSection() {
return section;
}
public void setSection(List<Options> section) {
this.section = section;
}
}
The XmlAdapter will look something like this:
import javax.xml.bind.annotation.adapters.XmlAdapter;
public class OptionsAdapter extends XmlAdapter<AdaptedOptions, Options> {
#Override
public Options unmarshal(AdaptedOptions v) throws Exception {
if("default_options".equals(v.name)) {
DefaultOptions options = new DefaultOptions();
options.setName(v.getName());
options.setDefaultPort(Integer.valueOf(v.map.get("default_port")));
options.setLogLevel(v.map.get("log_level"));
return options;
} else {
CustomOptions options = new CustomOptions();
options.setName(v.getName());
options.setCompatibility(v.map.get("compatibility"));
options.setMemory(v.map.get("memory"));
return options;
}
}
#Override
public AdaptedOptions marshal(Options v) throws Exception {
AdaptedOptions adaptedOptions = new AdaptedOptions();
adaptedOptions.setName(v.getName());
if(DefaultOptions.class == v.getClass()) {
DefaultOptions options = (DefaultOptions) v;
adaptedOptions.map.put("default_port", String.valueOf(options.getDefaultPort()));
adaptedOptions.map.put("log_level", options.getLogLevel());
} else {
CustomOptions options = (CustomOptions) v;
adaptedOptions.map.put("compatibility", options.getCompatibility());
adaptedOptions.map.put("memory", options.getMemory());
}
return adaptedOptions;
}
}
AdaptedOptions looks like:
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import javax.xml.bind.Marshaller;
import javax.xml.bind.Unmarshaller;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlValue;
public class AdaptedOptions extends Options {
#XmlAttribute String name;
#XmlElement List<Value> value = new ArrayList<Value>();
Map<String, String> map = new HashMap<String, String>();
public void beforeMarshal(Marshaller marshaller) {
for(Entry<String, String> entry : map.entrySet()) {
Value aValue = new Value();
aValue.name = entry.getKey();
aValue.value = entry.getValue();
value.add(aValue);
}
}
public void afterUnmarshal(Unmarshaller unmarshaller, Object parent) {
for(Value aValue : value) {
map.put(aValue.name, aValue.value);
}
}
private static class Value {
#XmlAttribute String name;
#XmlValue String value;
}
}
You may create a separate classes to represent structure of your XML:
public class Section {
#XmlAttribute
public String name;
#XmlElement(name = "value")
public List<Value> values;
}
public class Value {
#XmlAttribute
public String name;
#XmlValue
public String value;
}
and then use an XmlAdapter to perform conversion:
public class OptionsAdapter extends XmlAdapter<Section, Options> {
public Options unmarshal(Section s) {
if ("default_options".equals(s.name)) {
...
} else if (...) {
...
}
...
}
...
}
#XmlElement
public class Configuration {
#XmlElement(name = "section")
#XmlJavaTypeAdapter(OptionsAdapter.class)
public List<Options> options;
}
public class DefaultOptions extends Options { ... }
public class CustomOptions extends Options { ... }